AIc                     Calculates corrected Assignment Index
allele.count            Allelic counts
allelic.richness        Estimates allelic richness
basic.stats             Basic statistics
betas                   Estimate betas per population and a bootstrap
                        confidence interval
boot.ppfis              Performs bootstrapping over loci of
                        population's Fis
boot.ppfst              Performs bootstrapping over loci of pairwise
                        Fst
boot.vc                 Bootstrap confidence intervals for variance
                        components
crocrussula             Genotypes and sex of 140 shrews Crocidura
                        russula
eucl.dist               Estimates euclidian distances
eucl.dist.trait         calculates euclidian distance among populations
                        for a trait
exhier                  Example data set with 4 levels, one diploid and
                        one haploid locus
fstat                   Wrapper for fst estimator from hierfstat
                        package (from adegenet)
g.stats                 Calculates likelihood-ratio G-statistic on
                        contingency table
g.stats.glob            Likelihood ratio G-statistic over loci
genet.dist              Classical genetic distances estimation
genind2hierfstat        Converts genind objects from adegenet into a
                        hierfstat data frame
genot2al                Separates diploid genotypes in its constituant
                        alleles
getal                   Converts diploid genotypic data into allelic
                        data
getal.b                 Converts diploid genotypic data into allelic
                        data
gstat.randtest          Goudet's G-statistic Monte Carlo test for
                        genind object
gtrunchier              Genotypes at 6 microsatellite loci of Galba
                        truncatula from different patches in Western
                        Switzerland
hierfstat               General information on the hierfstat package
ind.count               individual counts
indpca                  PCA on a matrix of individuals genotypes
                        frequencies
mat2vec                 Rewrite a matrix as a vecor
nb.alleles              Number of different alleles
pairwise.WCfst          Estimate pairwise FSTs according to Weir and
                        Cockerham (1984)
pairwise.neifst         Estimate pairwise FSTs according to Nei (1987)
pcoa                    Principal coordinate analysis
pop.freq                Allelic frequencies
pp.fst                  fst per pair
pp.sigma.loc            wrapper to return per locus variance components
print.pp.fst            print function for pp.fst
qn2.read.fstat          Read QuantiNemo extended format for genotype
                        files
read.fstat              Reads data from a FSTAT file
read.fstat.data         Reads data from a FSTAT file
samp.between            Shuffles a sequence among groups defined by the
                        input vector
samp.between.within     Shuffles a sequence
samp.within             Shuffles a sequence within groups defined by
                        the input vector
sexbias.test            Test for sex biased dispersal
sim.freq                Simulates frequencies, for internal use only
sim.genot               Simulates genotypes in an island model at
                        equilibrium
sim.genot.t             Simulate data from a non-equilibrium island
                        model
subsampind              Subsample a FSTAT data frame
test.between            Tests the significance of the effect of
                        test.lev on genetic differentiation
test.between.within     Tests the significance of the effect of
                        test.lev on genetic differentiation
test.g                  Tests the significance of the effect of level
                        on genetic differentiation
test.within             Tests the significance of the effect of
                        inner.level on genetic differentiation within
                        blocks defined by outer.level
varcomp                 Estimates variance components for each allele
                        of a locus
varcomp.glob            Estimate variance components and hierarchical
                        F-statistics over all loci
vec2mat                 Reads a vector into a matrix
wc                      Computes Weir and Cockrham estimates of
                        Fstatistics
write.bayescan          Writes a bayescan file
write.fstat             Write an Fstat data file
write.ped               Write ped file plink analysis
write.struct            Write structure file
yangex                  Example data set from Yang (1998) appendix
