# Genome Structure Rearrangement Calling in Genomes with High Synteny

## Documentation for package ‘gsrc’ version 1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

check_raw | Check raw data
cnv | Copy Number Variation
filter_cnv | Filter Copy number variations
filt_samp | Filter Samples
filt_snps | Filter SNPs
filt_snps.norm_data | Filter SNPs
filt_snps.raw_data | Filter SNPs
find_blocks | Find Synteny Blocks
geno_baf_rratio | Genotype with kmeans using three clusters
intens_theta | Preprocess raw values and calculate Intensity and Theta values
plot_cnv | Plot Copy Number Variations
plot_global | Plot all chromosomes of a population
plot_gsr | Plot all chromosomes of a sample
plot_raw_snp | Plot raw SNP
plot_samp | Plot all chromosomes of a sample
plot_trans_locations | Plot translocations
read_intensities | Read multiple idat files.
read_sample_sheets | Read sample sheet(s)
remove_suffix | Remove suffix from sample names
rename_samples | Rename sample names
rename_samples.norm_data | Rename sample names
rename_samples.raw_data | Rename sample names
segm | Segmentation of R ratio values
synteny_info | Class for synteny information
trans_location | Find translocations