# Empirical Differentially Methylated Regions Calculation

## Documentation for package ‘edmr’ version 0.6.3.1

- DESCRIPTION file.

## Help Pages

cpgi.anno | generate CpG islands GRangesList object
edmr | Empirical differentially methylated regions
filter.dmr | significant DMRs
genebody.anno | generate genebody GRangesList object
get.dmr.genes | get gene list based the genebody granges
get.hyper.dmr | get hyper-methylated DMRs
get.hypo.dmr | get hypo-methylated DMRs
myDiff | Example myDiff object.
myDiff.to.mixmdl | obtain mixtools model from 'myDiff' object
plotCost | plot cost function and the determined distance cutoff
plotdmrdistr | plot eDMR distribution over the subject genomic ranges
plotMdl1 | plot the fitted bimodal normal distribution for CpGs distances distribution