Package: edmr
Type: Package
Title: Empirical Differentially Methylated Regions Calculation
Description: Optimized DMR analysis based on bimodal normal distribution 
  model and cost function for regional methylation analysis optimization. 
  It captures the regional methylation modification by taking the spatial 
  distribution of CpGs into account for the enrichment DNA methylation sequencing 
  data so as to optimize the definition of the empirical regions. Combined with 
  the dependent adjustment for regional p-value combination and DMR annotation. 
Version: 0.6.3.1
Authors@R: c(person(given="Sheng", family="Li", role=c("aut","cre", "cph"), email = "shelly1436@gmail.com"),
              person(given="Francine", family="Garrett-Bakelman", role="ctb"),
              person(family="Akalin", given="Altuna", role="ctb"),
              person(family="Zumbo", given="Paul", role="ctb"),
              person(family="Melnick", given="Ari", role="ctb"),
              person(family="Mason", given="Chris", role=c("ctb","ths")))
Maintainer: Sheng Li <shelly1436@gmail.com>
Depends: R (>= 3.2.1)
Imports: GenomicRanges, IRanges, data.table, mixtools, S4Vectors
License: Artistic-2.0
URL: https://github.com/ShengLi/edmr
LazyData: true
Collate: 'ACF.R' 'edmr.R' 'eDMR.sub.R' 'get.dist.cutoff.R' 'getDMR.R'
        'getPeaks.R' 'helpers.R' 'myDiff.to.mixmdl.R' 'myDiffToDMR.R'
        'plotCost.R' 'plotMdl1.R' 'filter.dmr.R' 'annotation.R'
        'document_data.R'
Packaged: 2014-04-07 15:24:10 UTC; shl2018
Author: Sheng Li [aut, cre, cph],
  Francine Garrett-Bakelman [ctb],
  Altuna Akalin [ctb],
  Paul Zumbo [ctb],
  Ari Melnick [ctb],
  Chris Mason [ctb, ths]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-09 14:55:26
Built: R 3.2.5; ; 2016-05-02 06:51:34 UTC; windows
