GDSforGSE               Retrieve information about a GDS for a given
                        GSE
GSEforGPL               Retrieve information about a GSE for a given
                        GPL
GSEinDB                 Retrieve information about a GSE loaded in the
                        compendium database
GSMdescriptions         List sample annotation of samples for a given
                        GSE
checkUpdates            Check whether GSE records have been updated on
                        GEO
compendiumdb-package    Tools for Retrieval and Storage of Functional
                        Genomics Data
connectDatabase         Create connection with the MySQL compendium
                        database
createESET              Create a Bioconductor ExpressionSet
downloadGEOdata         Download a GSE record from GEO
loadDataToCompendium    Load GSE into the compendium database
loadDatabaseSchema      Load the compendium database schema
removeGSE               Remove a GSE from the compendium database
tagExperiment           Tag an experiment with text labels
updatePhenoData         Update the phenotypic data of a GSE record
