biomart                 Main BioMart Query Function
download.database       Download a NCBI Database to Your Local Hard
                        Drive
download.database.all   Download all elements of an NCBI databse
getAssemblyStats        Genome Assembly Stats Retrieval
getAttributes           Retrieve All Available Attributes for a
                        Specific Dataset
getCDS                  Coding Sequence Retrieval
getDatasets             Retrieve All Available Datasets for a BioMart
                        Database
getENSEMBLGENOMESInfo   Retrieve ENSEMBLGENOMES info file
getENSEMBLInfo          Retrieve ENSEMBL info file
getFilters              Retrieve All Available Filters for a Specific
                        Dataset
getGENOMEREPORT         Retrieve NCBI GENOME_REPORTS file
getGFF                  Genome Annotation Retrieval
getGO                   Gene Ontology Query
getGenome               Genome Retrieval
getGroups               Retrieve available groups for a kingdom of life
getKingdomAssemblySummary
                        Retrieve and summarise the assembly_summary.txt
                        files from NCBI for all kingdoms
getKingdoms             Retrieve available kingdoms of life
getMarts                Retrieve All Available BioMart Databases
getMetaGenomeAnnotations
                        Retrieve annotation *.gff files for metagenomes
                        from NCBI Genbank
getMetaGenomeSummary    Retrieve the assembly_summary.txt file from
                        NCBI genbank metagenomes
getMetaGenomes          Retrieve metagenomes from NCBI Genbank
getProteome             Proteome Retrieval
getSummaryFile          Helper function to retrieve the
                        assembly_summary.txt file from NCBI
is.genome.available     Check Genome Availability
listDatabases           Retrieve a List of Available NCBI Databases for
                        Download
listGenomes             List All Available Genomes
listGroups              List number of available genomes in each group
listKingdoms            List number of available genomes in each
                        kingdom of life
listMetaGenomes         List available metagenomes on NCBI Genbank
meta.retrieval          Perform Meta-Genome Retieval
meta.retrieval.all      Perform Meta-Genome Retieval of all organisms
                        in all kingdoms of life
organismAttributes      Retrieve Biomart Attributes for an Organism
organismBM              Retrieve Biomart Marts and Datasets for an
                        Organism
organismFilters         Retrieve Biomart Filters for an Organism
read_assemblystats      Import Genome Assembly Stats File
read_cds                Import CDS as Biostrings or data.table object
read_genome             Import Genome Assembly as Biostrings or
                        data.table object
read_gff                Import GFF File
read_proteome           Import Proteome as Biostrings or data.table
                        object
refseqOrganisms         Retrieve All Organism Names Stored on refseq
