Package: apmsWAPP
Type: Package
Title: Pre- and Postprocessing for AP-MS data analysis based on
        spectral counts
Version: 1.0
Date: 2013-03-14
Author: Martina Fischer
Maintainer: Martina Fischer <fischerm@rki.de>
Description: apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. 
		It comprises pre-processing, scoring and postprocessing of protein interactions.
		A final list of interaction candidates is reported: it provides a ranking of the candidates according 
		to their p-values which allow estimating the number of false-positive interactions.
Imports: genefilter, Biobase, seqinr, multtest, gtools, edgeR, DESeq,
        aroma.light
License: LGPL-3
LazyLoad: yes
SystemRequirements: SAINT_v2.3.4
Packaged: 2014-04-04 09:51:38 UTC; fischerm
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 12:38:28
Built: R 3.2.5; ; 2017-04-20 07:38:15 UTC; windows
