# Stereo Camera Calibration and Reconstruction

## Documentation for package ‘StereoMorph’ version 1.6.1

- DESCRIPTION file.

## Help Pages

A C D E F G I L M O P Q R S T U W X

StereoMorph-package | Stereo Camera Morphometrics

## -- A --

alignLandmarksToMidline | Aligns bilateral landmarks to the midline plane
alignShapesToMidline | Stereo Camera Morphometrics
avectors | Computes the angle between two vectors

## -- C --

calibrateCameras | Finds the optimized DLT coefficients for a stereo camera setup
checkCornerOrder | Stereo Camera Morphometrics
check_system_command_SM | Stereo Camera Morphometrics
cprod_SM | Stereo Camera Morphometrics
createErrorPlots | Stereo Camera Morphometrics

## -- D --

digitizeImage | Opens the StereoMorph Digitizing App
digitizeImages | Opens the StereoMorph Digitizing App
dilateImage | Stereo Camera Morphometrics
distanceGridUnits | Returns the distances between pairs of points on a square grid
distancePointToLine | Finds the minimum distance(s) between point(s) and a line
distancePointToPoint | Finds the distance between two points or sets of points
distortionError | Stereo Camera Morphometrics
dltCalibrateCameras | Finds the optimized DLT coefficients for a stereo camera setup
dltCCEstimateStartParams | Stereo Camera Morphometrics
dltCoefficientRMSError | Returns the error during calibration coefficient optimization
dltCoefficients | Computes DLT coefficients for a stereo camera setup
dltEpipolarDistance | Finds the distance between a point and a self-epipolar line
dltEpipolarLine | Finds a epipolar or self-epipolar line
dltInverse | Returns ideal pixel coordinates of 3D point(s) in a stereo camera setup
dltMatchCurvePoints | Matches curve points between two camera views
dltNearestPointOnEpipolar | Returns the closest point on a epipolar line to a point or points
dltReconstruct | Reconstructs the 3D position of points in two or more camera views
dltTestCalibration | Tests the accuracy of a stereo camera calibration
dltTransformationParameterRMSError | Returns the error during transformation parameter optimization
drawCheckerboard | Creates a checkerboard image
drawRectangle | Stereo Camera Morphometrics
drawShapes | Stereo Camera Morphometrics

## -- E --

epipolarBezier | Stereo Camera Morphometrics
equalizeImageHist | Stereo Camera Morphometrics
erodeImage | Stereo Camera Morphometrics
estimateDistortion | Stereo Camera Morphometrics
estimateDLTCoefficients | Stereo Camera Morphometrics
estimateUndistortion | Stereo Camera Morphometrics
extractFrames | Extracts frames from video

## -- F --

findBoundaryPoints | Stereo Camera Morphometrics
findCheckerboardCorners | Finds internal corners of a checkerboard pattern
findCornerSubPix | Stereo Camera Morphometrics
findEpipolarTangencyAngles | Stereo Camera Morphometrics
findHomography | Stereo Camera Morphometrics
findInterpointDistanceError | Stereo Camera Morphometrics
findOptimalPointAlignment | Optimally aligns one point set to another

## -- G --

generateQuads | Stereo Camera Morphometrics
gridPointsFit | Fits regularly spaced points to a sample line or grid
gridPointsFitError | Stereo Camera Morphometrics

## -- I --

imagePlaneGridTransform | Performs image perspective transformations to a grid
imagePlaneGridTransformError | Returns imagePlaneGridTransform error
intCornersFromQuads | Stereo Camera Morphometrics
inverseGridTransform | Stereo Camera Morphometrics

## -- L --

landmarkListToMatrix | Converts a landmark list to a landmark matrix
landmarkMatrixToList | Converts a landmark matrix to a landmark list
list2XML4R | Stereo Camera Morphometrics
listToJSONStr | Stereo Camera Morphometrics

## -- M --

matchCurvePoints | Stereo Camera Morphometrics
meanBlurImage | Stereo Camera Morphometrics
measureCheckerboardSize | Estimates checkerboard square size

## -- O --

orderCorners | Stereo Camera Morphometrics
orthogonalProjectionToLine | Finds the orthogonal projection of a point onto a line

## -- P --

pointsAtEvenSpacing | Generates evenly spaced points from point matrix
print.calibrateCameras | Finds the optimized DLT coefficients for a stereo camera setup
print.shapes | Reads a StereoMorph shape file
print.summary.alignLandmarksToMidline | Aligns bilateral landmarks to the midline plane
print.summary.dltCalibrateCameras | Finds the optimized DLT coefficients for a stereo camera setup
print.summary.dltCoefficients | Computes DLT coefficients for a stereo camera setup
print.summary.dltMatchCurvePoints | Matches curve points between two camera views
print.summary.dltReconstruct | Reconstructs the 3D position of points in two or more camera views
print.summary.dltTestCalibration | Tests the accuracy of a stereo camera calibration
print.summary.measureCheckerboardSize | Estimates checkerboard square size
print.summary.reflectMissingLandmarks | Reflects missing landmarks across the plane of symmetry
print.summary.unifyLandmarks | Optimally align a set of partial landmark sets
print_processing_times | Stereo Camera Morphometrics
process_digitize_images_input | Stereo Camera Morphometrics

## -- Q --

quadraticPointsOnInterval | Generates points along an interval with quadratic parameterization

## -- R --

readBezierControlPoints | Reads a file of Bezier control points
readCheckerboardsToArray | Reads file(s) containing grid points into an array
readLandmarksToArray | Stereo Camera Morphometrics
readLandmarksToList | Reads landmark file(s) into a list
readLandmarksToMatrix | Reads a landmark file or files into a matrix
readShapes | Reads a StereoMorph shape file
readTPS | Stereo Camera Morphometrics
readXML4R | Stereo Camera Morphometrics
readXMLLines | Stereo Camera Morphometrics
read_video_info | Stereo Camera Morphometrics
reconstructStereoSets | 3D reconstruction of landmark and curves from stereo coordinates
reflectMissingLandmarks | Reflects missing landmarks across the plane of symmetry
reflectMissingShapes | Stereo Camera Morphometrics
removeOutlierCorners | Stereo Camera Morphometrics
resampleGridImagePoints | Resamples imaged grid points
rgbToGray | Stereo Camera Morphometrics
rotationMatrixZYX_SM | Stereo Camera Morphometrics

## -- S --

StereoMorph | Stereo Camera Morphometrics
StereoMorph_dilateImage | Stereo Camera Morphometrics
StereoMorph_drawRectangle | Stereo Camera Morphometrics
StereoMorph_equalizeImageHist | Stereo Camera Morphometrics
StereoMorph_erodeImage | Stereo Camera Morphometrics
StereoMorph_findBoundaryPoints | Stereo Camera Morphometrics
StereoMorph_findCornerSubPix | Stereo Camera Morphometrics
StereoMorph_generateQuads | Stereo Camera Morphometrics
StereoMorph_intCornersFromQuads | Stereo Camera Morphometrics
StereoMorph_meanBlurImage | Stereo Camera Morphometrics
StereoMorph_orderCorners | Stereo Camera Morphometrics
StereoMorph_rgbToGray | Stereo Camera Morphometrics
StereoMorph_thresholdImageMatrix | Stereo Camera Morphometrics
summary.alignLandmarksToMidline | Aligns bilateral landmarks to the midline plane
summary.dltCalibrateCameras | Finds the optimized DLT coefficients for a stereo camera setup
summary.dltCoefficients | Computes DLT coefficients for a stereo camera setup
summary.dltMatchCurvePoints | Matches curve points between two camera views
summary.dltReconstruct | Reconstructs the 3D position of points in two or more camera views
summary.dltTestCalibration | Tests the accuracy of a stereo camera calibration
summary.measureCheckerboardSize | Estimates checkerboard square size
summary.reflectMissingLandmarks | Reflects missing landmarks across the plane of symmetry
summary.unifyLandmarks | Optimally align a set of partial landmark sets

## -- T --

testCalibration | Stereo Camera Morphometrics
thresholdImageMatrix | Stereo Camera Morphometrics
tMatrixDC_SM | Stereo Camera Morphometrics
TPSToShapes | Converts TPS file to shape file
transformPlanarCalibrationCoordinates | Performs rotational and translational transformations to a planar grid

## -- U --

undistort | Stereo Camera Morphometrics
undistortionError | Stereo Camera Morphometrics
undistortShapes | Stereo Camera Morphometrics
unifyLandmarks | Optimally align a set of partial landmark sets
uvector_SM | Stereo Camera Morphometrics

## -- W --

writeLMToTPS | Writes landmarks as TPS file

## -- X --

XML4R2list | Stereo Camera Morphometrics
XML4R2listLines | Stereo Camera Morphometrics