# Spatial Modeling on Stream Networks

## Documentation for package ‘SSN’ version 1.1.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

SSN-package | Spatial Modeling on Stream Networks
additive.function | Generate an Additive Function Value
AIC.glmssn | AIC for glmssn objects
as.SpatialLines | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialLines.SpatialStreamNetwork | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialLinesDataFrame | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialLinesDataFrame.SpatialStreamNetwork | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPoints | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPoints.SpatialStreamNetwork | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPointsDataFrame | Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPointsDataFrame.SpatialStreamNetwork | Methods to convert SpatialStreamNetwork objects classes to sp classes
binomialDesign | Design functions
binSp | Fitted glmssn object for example data set MiddleFork.ssn
BlockPredict | Block Predicton for Streams Data
BLUP | Compute the joint mean, variance and covariance of any random effects in a glmssn model conditional on the data
boxplot.SpatialStreamNetwork | Box-and-whisker plots for data within SpatialStreamNetwork objects.
copyLSN2temp | Copies the lsn directory MiddleFork04.ssn to R's temporary directory
covparms | Get Covariance Parameters
createDistMat | Calculate Hydrologic Distances for a SpatialStreamNetwork Object
createSSN | Create an SpatialStreamnetwork Object
CrossValidationSSN | Compute Crossvalidation Values for glmssn Objects
CrossValidationStatsSSN | Compute Summary Statistics on Crossvalidation Values for glmssn Objects
EmpiricalSemivariogram | Empirical Semivariogram Based on Euclidean Distance
fitNS | Fitted glmssn object for example data set MiddleFork.ssn
fitRE | Fitted glmssn object for example data set MiddleFork.ssn
fitSimBin | Fitted glmssn object for simulated data
fitSimGau | Fitted glmssn object for simulated data
fitSimPoi | Fitted glmssn object for simulated data
fitSp | Fitted glmssn object for example data set MiddleFork.ssn
fitSpBk | Fitted glmssn object for example data set MiddleFork.ssn
fitSpRE1 | Fitted glmssn object for example data set MiddleFork.ssn
fitSpRE2 | Fitted glmssn object for example data set MiddleFork.ssn
getConfusionMat | Extract confusion matrix for binary spatial model predictions.
getPreds | Extract Predictions with associated standard errors.
getSSNdata.frame | Extract data from SSN objects as a data.frame
getStreamDistMat | Extract the stream network distance matrix from SSN objects
glmssn | Fitting Generalized Linear Models for Spatial Stream Networks
glmssn-class | Class "glmssn"
GR2 | Generalised R2
hardCoreDesign | Design functions
igraphKamadaKawai | Create an SpatialStreamnetwork Object
importPredpts | Import Prediction Points into a SpatialStreamNetwork or glmssn Object
importSSN | Import an object of class SpatialStreamNetwork
influenceSSN-class | Class "influenceSSN"
InfoCritCompare | Compare 'glmssn' Information Criteria
iterativeTreeLayout | Create an SpatialStreamnetwork Object
mf04 | imported SpatialStreamNetwork object from MiddleFork04.ssn data folder
mf04p | Imported SpatialStreamNetwork object from MiddleFork04.ssn data folder
MiddleFork04.ssn | MiddleFork04.ssn data folder
noPoints | Design functions
plot.glmssn.predict | Plot glmssn.predict Objects
plot.influenceSSN | Plotting Method for influenceSSN Objects
plot.SpatialStreamNetwork | Plotting Method for SpatialStreamNetwork Objects
plot.Torgegram | Plotting Method for Torgegram Objects
poiSp | Fitted glmssn object for example data set MiddleFork.ssn
poissonDesign | Design functions
predict.glmssn | Calculate Predictions for Prediction Sites
print.summary.glmssn | Print summary - S3 Method for Class 'glmssn'
putSSNdata.frame | putSSNdata.frame
residuals.glmssn | Compute Model Residuals for glmssn Objects
SimulateOnSSN | Simulating Data on Spatial Stream Networks
SpatialStreamNetwork-class | Class "SpatialStreamNetwork"
splitPredictions | Split Prediction Sets in a SpatialStreamNetwork Object
SSN | Spatial Modeling on Stream Networks
subsetSSN | Subset a SpatialStreamNetwork Object
summary.glmssn | Summary - S3 Method for Class 'glmssn'
summary.SpatialStreamNetwork | Plotting Method for SpatialStreamNetwork Objects
systematicDesign | Design functions
Torgegram | Empirical Semivariogram Based on Hydrologic Distance and flow connection
updatePath | Update Path Slot in SpatialStreamNetwork Object
varcomp | Variance Components for glmssn Objects
writeSSN | Write a SpatialStreamNetwork Object