# GWAS for Multiple Observations on Related Individuals

## Documentation for package ‘RepeatABEL’ version 1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

RepeatABEL-package | GWAS for repeated observations on related individuals
compute.GRM | Computes a Genetic Relationship Matrix from a GenABEL object
constructV | Constructs the (co)variance matrix for y
Create_gwaa_scan | Creates a scan.gwaa object
flycatchers | 10,000 SNPs from 849 collared flycatchers
gen.data | Example GenABEL data
Phen.Data | Example phenotype data
preFitModel | Fits a linear mixed model (without fixed SNP effects) and computes the fitted variance-covariance matrix for later use in the rGLS function.
RepeatABEL | GWAS for repeated observations on related individuals
rGLS | GWAS for Studies having Repeated Measurements on Related Individuals
simulate_PhenData | Simulation function for the RepeatABEL package.
SmoothSNPmatrix | Imputes column means to missing genotypes
thinned.flycatchers | 10,000 SNPs from 200 collared flycatchers