# 'Rcmdr' Plug-in GUI for Biclustering

## Documentation for package ‘RcmdrPlugin.BiclustGUI’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C E F G H I J M N O P R S V W misc

RcmdrPlugin.BiclustGUI-package | The BiclustGUI package

## -- A --

as.ExprSet | List of Internal Functions

## -- B --

bcdiaghighlight_WINDOW | GUI Functions
bcdiagwrite_WINDOW | Window Functions
BCDIAG_isa2biclust | List of Internal Functions
bcdiag_WINDOW | Window Functions
bibit3_BC_GUI | GUI Functions
bibit3_WIN | Window Functions
bibit_WIN | Window Functions
bicare.genesetenrichment | GUI Functions
bicare.GUI | GUI Functions
bicare.makereport | GUI Functions
bicare.pdata | GUI Functions
bicare.residuplot | GUI Functions
bicare.samplesenrichment | GUI Functions
bicarebiclust_WINDOW | Window Functions
bicare_WINDOW | Window Functions
biclust.bimax.GUI | GUI Functions
biclust.quest.GUI | GUI Functions
biclust.robust.fuse | GUI Functions
biclust.robust.fuse.GUI | GUI Functions
biclustbimax_WIN | Window Functions
biclustCC_WIN | Window Functions
biclustextraplots_WINDOW | Window Functions
biclustguiwebsitelink | GUI Functions
biclustGUI_help | GUI Functions
biclustplaid_WIN | Window Functions
biclustquest_WIN | Window Functions
biclustspectral_WIN | Window Functions
biclustXMotif_WIN | Window Functions

## -- C --

chooseresultsGUI | GUI Functions
clearresults_WINDOW | Window Functions
cluster_template | Template Script Functions

## -- E --

export.Biclust | GUI Functions
export.fabia | GUI Functions
export.fabia.threshL | GUI Functions
exportFURBY_WINDOW | Window Functions
exportTXT_WINDOW | Window Functions
ExtractBiclustersGUI | GUI Functions
ExtractBiclustersGUI_general | GUI Functions
extractbicluster_WINDOW | Window Functions

## -- F --

fabia.biplot | GUI Functions
fabiabiclust_WINDOW | Window Functions
fabialaplace_WIN | Window Functions
fabiapostprojection_WIN | Window Functions
fabiasparsenessprojection_WIN | Window Functions
fabiaSPARSE_WIN | Window Functions
FindBiclusters | GUI Functions
findbiclusters_WINDOW | Window Functions

## -- G --

greenred | List of Internal Functions

## -- H --

HeatmapBC.GUI | GUI Functions

## -- I --

iBBiG_WIN | Window Functions
image_WINDOW | Window Functions
indexedBic | List of Internal Functions
isa.extract | GUI Functions
isa.GUI | GUI Functions
isa.scoreplots | GUI Functions
isa.summary | GUI Functions
isadefault_WIN | Window Functions
isadefault_WIN_TEMPORARY | GUI Functions
isaextraplots_WINDOW | Window Functions

## -- J --

jaccard_WINDOW | Window Functions

## -- M --

MaxBC_WINDOW | Window Functions

## -- N --

newmethod_WINDOW | Window Functions
newtool_template | Template Script Functions
newtool_WINDOW | Window Functions

## -- O --

openGUIScripts | GUI Functions
openGUIVignette | GUI Functions

## -- P --

parallelCoordinates2 | GUI Functions
parallelCoordinates3 | GUI Functions
plotgridpref_WINDOW | Window Functions
plotSuper.GUI | GUI Functions

## -- R --

RcmdrPlugin.BiclustGUI | The BiclustGUI package
redgreen | List of Internal Functions
repeatanalysis.GUI | GUI Functions
robust.fuse.support | List of Internal Functions
robust.reset | GUI Functions
rqubic.GUI | GUI Functions
rqubic_WINDOW | Window Functions

## -- S --

s4vd_WIN | Window Functions
saveload_WINDOW | Window Functions
SearchMethodData | List of Internal Functions
search_WINDOW | Window Functions
Setwd | List of Internal Functions
shinylinkstandalone | GUI Functions
shinylinkwebsite | GUI Functions
spfabia.GUI | GUI Functions
ssvd_WIN | Window Functions
summaryBICARE | GUI Functions
superbiclust.GUI | GUI Functions
superbiclust.robust.GUI | GUI Functions
superbiclust_WINDOW | Window Functions

## -- V --

viridis | List of Internal Functions

## -- W --

writeBic.GUI | GUI Functions

## -- misc --

.add.frame | Template Script Functions
.AssignEnvBiclustGUI | List of Internal Functions
.bicare2biclust | List of Internal Functions
.binary.activematrix.check | List of Internal Functions
.build.button.function | List of Internal Functions
.build.command.argument | List of Internal Functions
.checkplotgridpref | List of Internal Functions
.combine.rows | Template Script Functions
.correctdataforresults | List of Internal Functions
.eval.command | List of Internal Functions
.fabia2biclust | List of Internal Functions
.find.frame | List of Internal Functions
.GetEnvBiclustGUI | List of Internal Functions
.give.doublequote | List of Internal Functions
.grid.matrix | Template Script Functions
.initialize.grid.config | Template Script Functions
.initialize.grid.rows | Template Script Functions
.initialize.new.frames | Template Script Functions
.is.binary.matrix | List of Internal Functions
.isa2biclust | List of Internal Functions
.isbiclustGUIresult | List of Internal Functions
.isBiclustresult | List of Internal Functions
.isISA | List of Internal Functions
.isListofBiclustGUIresults | List of Internal Functions
.make.correct.frame | List of Internal Functions
.makeResultList | List of Internal Functions
.makesearchdata | List of Internal Functions
.makeSuperbiclustResultList | List of Internal Functions
.order.button.frames | List of Internal Functions
.output.sparse.txt | List of Internal Functions
.putbefore | List of Internal Functions
.rcmdr.warning | List of Internal Functions
.tobiclust | List of Internal Functions
.tobiclust_transf | List of Internal Functions
.transform.vector2text | List of Internal Functions
.update.biclustering.object | List of Internal Functions