Achaz.stats	GENOME-class
Achaz.stats,GENOME-method	Achaz.stats
Achaz.stats-methods	Achaz.stats
BayeScanR	BayeScanR
calc.fixed.shared	GENOME-class
calc.fixed.shared,GENOME-method	calc.fixed.shared-methods
calc.fixed.shared-methods	calc.fixed.shared-methods
calc.R2	GENOME-class
calc.R2,GENOME-method	calc.R2-methods
calc.R2-methods	calc.R2-methods
codontable	codontable
concatenate.classes	concatenate.classes
concatenate.regions	concatenate.regions
count.unknowns	GENOME-class
count.unknowns,GENOME-method	count.unknowns-methods
count.unknowns-methods	count.unknowns-methods
create.PopGenome.method	create.PopGenome.method
detail.stats	GENOME-class
detail.stats,GENOME-method	detail.stats-methods
detail.stats-methods	detail.stats-methods
diversity.stats	GENOME-class
diversity.stats,GENOME-method	diversity.stats-methods
diversity.stats-methods	diversity.stats-methods
diversity.stats.between	GENOME-class
diversity.stats.between,GENOME-method	diversity.stats.between-methods
diversity.stats.between-methods	diversity.stats.between-methods
fasta_file	fasta_file
F_ST.stats	GENOME-class
F_ST.stats,GENOME-method	F_ST.stats-methods
F_ST.stats-methods	F_ST.stats-methods
F_ST.stats.2	GENOME-class
F_ST.stats.2,GENOME-method	F_ST.stats.2-methods
F_ST.stats.2-methods	F_ST.stats.2-methods
GENOME-class	GENOME-class
get.biallelic.matrix	GENOME-class
get.biallelic.matrix,GENOME-method	get.biallelic.matrix-methods
get.biallelic.matrix-methods	get.biallelic.matrix-methods
get.codons	GENOME-class
get.codons,GENOME-method	get.codons-methods
get.codons-methods	get.codons-methods
get.detail	GENOME-class
get.detail,GENOME-method	detail.stats-methods
get.detail-methods	detail.stats-methods
get.diversity	GENOME-class
get.diversity,GENOME-method	F_ST.stats-methods
get.diversity-methods	F_ST.stats-methods
get.feature.names	get.feature.names
get.F_ST	GENOME-class
get.F_ST,GENOME-method	F_ST.stats-methods
get.F_ST-methods	F_ST.stats-methods
get.individuals	GENOME-class
get.individuals,GENOME-method	get.individuals-methods
get.individuals-methods	get.individuals-methods
get.linkage	GENOME-class
get.linkage,GENOME-method	linkage.stats-methods
get.linkage-methods	linkage.stats-methods
get.MKT	GENOME-class
get.MKT,GENOME-method	MKT-methods
get.MKT-methods	MKT-methods
get.neutrality	GENOME-class
get.neutrality,GENOME-method	neutrality.stats-methods
get.neutrality-methods	neutrality.stats-methods
get.recomb	GENOME-class
get.recomb,GENOME-method	recomb.stats-methods
get.recomb-methods	recomb.stats-methods
get.status	GENOME-class
get.status,GENOME-method	get.status-methods
get.status-methods	get.status-methods
get.sum.data	GENOME-class
get.sum.data,GENOME-method	readData
get.sum.data-methods	readData
get.sweeps	GENOME-class
get.sweeps,GENOME-method	sweeps.stats-methods
get.sweeps-methods	sweeps.stats-methods
getBayes	GENOME-class
getBayes,GENOME-method	getBayes-methods
getBayes-methods	getBayes-methods
getMS,GENOME-method	GENOME-class
get_gff_info	get_gff_info
gff_file	gff_file
GFF_split_into_scaffolds	GFF_split_into_scaffolds
introgression.stats	GENOME-class
introgression.stats,GENOME-method	introgression.stats
introgression.stats-methods	introgression.stats
jack.knife.transform	GENOME-class
jack.knife.transform,GENOME-method	jack.knife.transform-methods
jack.knife.transform-methods	jack.knife.transform-methods
linkage.stats	GENOME-class
linkage.stats,GENOME-method	linkage.stats-methods
linkage.stats-methods	linkage.stats-methods
load.session	load.session
MKT	GENOME-class
MKT,GENOME-method	MKT-methods
MKT-methods	MKT-methods
MS	MS
MS_getStats	MS_getStats
mult.linkage.stats	GENOME-class
mult.linkage.stats,GENOME-method	mult.linkage.stats
mult.linkage.stats-methods	mult.linkage.stats
neutrality.stats	GENOME-class
neutrality.stats,GENOME-method	neutrality.stats-methods
neutrality.stats-methods	neutrality.stats-methods
PG_plot.biallelic.matrix	GENOME-class
PG_plot.biallelic.matrix,GENOME-method	PG_plot.biallelic.matrix
PG_plot.biallelic.matrix-methods	PG_plot.biallelic.matrix
popFSTN,GENOME-method	GENOME-class
PopGenome	PopGenome
PopGplot	PopGplot
read.big.fasta	read.big.fasta
readData	readData
readHapMap	readHapMap
readMS	readMS
readSNP	readSNP
readVCF	readVCF
recomb.stats	GENOME-class
recomb.stats,GENOME-method	recomb.stats-methods
recomb.stats-methods	recomb.stats-methods
region.as.fasta	GENOME-class
region.as.fasta,GENOME-method	region.as.fasta
region.as.fasta-methods	region.as.fasta
save.session	save.session
set.filter	GENOME-class
set.filter,GENOME-method	set.filter-methods
set.filter-methods	set.filter-methods
set.outgroup	GENOME-class
set.outgroup,GENOME-method	set.outgroup-methods
set.outgroup-methods	set.outgroup-methods
set.populations	GENOME-class
set.populations,GENOME-method	set.populations-methods
set.populations-methods	set.populations-methods
set.ref.positions	GENOME-class
set.ref.positions,GENOME-method	set.ref.positions
set.ref.positions-methods	set.ref.positions
set.synnonsyn	GENOME-class
set.synnonsyn,GENOME-method	set.synnonsyn-methods
set.synnonsyn-methods	set.synnonsyn-methods
show,GENOME-method	GENOME-class
show.slots	GENOME-class
show.slots,GENOME-method	show.slots-methods
show.slots-methods	show.slots-methods
sliding.window.transform	GENOME-class
sliding.window.transform,GENOME-method	sliding.window.transform-methods
sliding.window.transform-methods	sliding.window.transform-methods
snp_file	snp_file
splitting.data	GENOME-class
splitting.data,GENOME-method	splitting.data-methods
splitting.data-methods	splitting.data-methods
split_data_into_GFF_attributes	split_data_into_GFF_attributes
sweeps.stats	GENOME-class
sweeps.stats,GENOME-method	sweeps.stats-methods
sweeps.stats-methods	sweeps.stats-methods
test.params	test.params-class
test.params-class	test.params-class
usage,GENOME-method	GENOME-class
vcf_file	vcf_file
VCF_split_into_scaffolds	VCF_split_into_scaffolds
Whop_readVCF	Whop_readVCF
