# Identifying the Pathways Regulated by LncRNA Sets of Interest

## Documentation for package ‘LncPath’ version 1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

drawAHeatMap | Draw a heatmap for the genes of a pathway
findSigGenes | Find genes significantly differentially expressed between two conditions.
geneSetDetail | Gain insight into the detail of the genes in a certain pathway
getExampleData | Get the example data
getNet | Get the background lncRNA-mRNA interaction network
lncPath | Identify pathways synergisticly regulated by lncRNA sets.
lncPath2Table | Simplify the lncPath object into table
LncPathEnvir | The variables in the environment variable 'LncPathEnvir' of the system
plotRunningES | Visualize the Kolmogorov-Smirnov running score of pathway
printSignifResult | Output the details of significant pathways