AFtest                  Exact test of equality of allele frequencies
                        for males and females
Alzheimer               Genotype frequencies for 70 SNPs related to
                        Alzheimer's disease
GenerateSamples         Generate genotypic compositions
HWAlltests              Perform all tests for Hardy-Weinberg
                        equilibrium
HWAlr                   Compute additive log-ratio transformation
HWAlrPlot               Plot genetic markers in additive log-ratio
                        coordinates
HWChisq                 Chi square tests for Hardy Weinberg equilibrium
HWChisqMat              Matrix version of HWChisq
HWChisqStats            Fast computation of chi-square statistics for
                        Hardy-Weinberg equilibrium
HWClo                   Convert genotype counts to compositions
HWClr                   Compute the centred log-ratio transformation
HWClrPlot               Plot genetic markers in centred log-ratio
                        coordinates
HWCondProbAB            Compute probability of a genotypic sample
HWD                     Compute disequilibrium statistic D
HWData                  Generate genetic marker data in or out of
                        Hardy-Weinberg Equilibrium
HWExact                 Exact test for Hardy-Weinberg equilibrium
HWExactMat              Matrix version of HWExact
HWExactPrevious         Exact test for Hardy-Weinberg equilibrium
HWExactStats            Computation of Exact p-values for
                        Hardy-Weinberg equilibrium for sets of SNPs
HWGenotypePlot          Scatter plot of the genotype frequencies
HWIlr                   Compute isometric log ratio coordinates.
HWIlrPlot               Plot bi-allelic genetic markers in isometric
                        log ratio coordinates
HWLratio                Likelihood ratio test for Hardy Weinberg
                        equilibrium
HWMissing               Test a bi-allelic marker for Hardy-Weinberg
                        equilibrium in the presence of missing genotype
                        information.
HWPerm                  Permutation test for Hardy-Weinberg equilibrium
HWPower                 Compute the power of a test for Hardy-Weinberg
                        equilibrium.
HWQqplot                A Q-Q plot for Hardy-Weinberg equilibrium
HWTernaryPlot           Ternary plot with the Hardy-Weinberg acceptance
                        region
HWf                     Computation of inbreeding coefficient
HapMapCHBChr1           Genotype frequencies for 225 SNPs on chromosome
                        1 of the CHB population.
HardyWeinberg-package   Graphical tests for Hardy-Weinberg equilibrium
MakeCounts              Create genotype counts from bi-allelic marker
                        data
MakeFactor              Make factors from genotyping data
Markers                 SNP data and intensities
Mourant                 Genotype frequencies for blood group locus MN
UniqueGenotypeCounts    Extract unique genotypic compositions from a
                        matrix
af                      Function to compute allele frequencies
agcounts                Calculate allele and genotype counts for
                        X-chromosomal markers
fisherz                 Fisher's z transformation
ifisherz                Inverse Fisher z transformation
mac                     Compute the minor allele count.
maf                     Function to compute minor allele frequencies
recode                  Recode genotype information
vaf                     Computes the sample variance of the allele
                        frequency for a biallelic marker.
