# High-Dimensional Penalized Regression

## Documentation for package ‘HDPenReg’ version 0.93.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

HDPenReg-package | Algorithms for lasso and fused-lasso problems.
HDPenReg-package, | Algorithms for lasso and fused-lasso problems.
coef.LarsPath | Compute coefficients
coeff | get coefficients at a given step.
computeCoefficients | Compute coefficients
EMcvfusedlasso | cross validation for EM fused-lasso
EMcvlasso | cross validation for 'EMlasso'
EMfusedlasso | EM algorithm for fused-lasso penalty
EMlasso | EM algorithm for lasso penalty
HDcvlars | cross validation
HDfusion | Fusion algorithm
HDlars | Lars algorithm
HDPenReg | Algorithms for lasso and fused-lasso problems.
LarsPath | Constructor of LarsPath class
LarsPath-class | Constructor of LarsPath class
listToMatrix | List to sparse matrix conversion
plot-method | plot methods for LarsPath object
plot-methods | plot methods for LarsPath object
plot.HDcvlars | plot cross validation mean square error
plotCoefficient | Plot of coefficients
predict.LarsPath | Prediction of response
simul | Simulate copy number data for a case-control study.