Fragman                 Fragment analysis and automatic scoring
arrange.jm              Arrange data converted to joinmap code into a
                        joinmap readable file
best.layout             complementary tools for layout
big.peaks.col           Peak search by first derivatives
detect.ladder           Ladder detection by correlation or confidence
                        intervals
find.ladder             Ladder detection by correlation or confidence
                        intervals
get.scores              complementary tools
homo.panel              complementary tools
homogenize.to.parentals
                        complementary tools
jm.conv                 Scores to JoinMap converter
ladder.corrector        Ladder corrector attached to R environment
ladder.info.attach      Ladder detection and attachment to R
                        environment
lapply_pb               complementary tools for Fragman
letter.to.jm            Letter to JoinMap code converter
my.plants               Cranberry biparental population
num.to.lett             Number to Letter code converter
overview                Assesing several plants with an overview
overview2               Assesing several plants with an overview
pullup                  Applying pullup to channels/colors
read.abif               Read ABIF formatted files
reals                   Finding the real peaks
saturate                Checking and correcting saturated peaks
score.easy              Fragment analysis scoring
separate                Separating peaks by a shift window
storing.inds            Extracting channel information
threshs                 Customizing thresholds
transfft                Applying the fourier transformation to a data
                        frame
transp                  Creating color with transparency
