EcoGenetics-package     Spatial Analysis of Phenotypic, Genotypic and
                        Environmental Data
aue.dataAngle           Angles for an XY coordinates matrix
aue.df2image            Transforming a data frame into a raster
aue.image2df            Transforming a raster into a data frame with
                        cartesian coordinates
aue.phenosimil          Phenotypic similarity for vector, matrix or
                        data frame acoording to Ritland (1996)
aue.rescale             Scaling a data frame or matrix to [0, 1] or
                        [-1, 1] ranges
aue.sort                Ordering the content of cells in a matrix.
                        Ordering alleles in a genetic matrix.
coordinates             Coordinates
eco                     Eco
eco.NDVI                Generating atmospherically corrected NDVI and
                        MSAVI2 images for temporal series of Landsat 5
                        and 7
eco.NDVI.post           Postprocessing for NDVI and MSAVI 2 temporal
                        series of Landsat 5 and 7
eco.alfreq              Allelic frequency histograms for an ecogen
                        genetic data frame
eco.association         Chi-square and Fisher's exact test for
                        association of loci and alleles with a factor
eco.bearing             Angular Spatial Weights
eco.cbind               Combining the columns of ecogen object
eco.clear               Clearing the working environment, maintaining
                        only the specified objects
eco.convert             Conversion utility for genetic data
eco.cormantel           Mantel and partial Mantel correlograms,
                        omnidirectional and directional
eco.correlog            Moran's I, Geary's C and bivariate Moran's I
                        correlograms, omnidirectional and directional
eco.detrend             Detrending spatial data with polynomial
                        interpolation
eco.forestplot          Forestplot graphs
eco.format              Format tool for genetic data
eco.formula             Conversion of a formula for an ecogen objects
                        into an explict expression
eco.gsa                 Global spatial analysis
eco.kin.loiselle        Obtention of the multilocus Loiselle's Fij
                        matrix
eco.lagweight           Obtention of a list of spatial weights for
                        classes defined by inter-individual distances
                        or nearest-neighbors
eco.listw2ew            Conversion from listw to ecoweight
eco.lmtree              Fitting Multiple Linear Regression models by
                        stepwise AIC selection and Multiple
                        Classification and Regression Trees via party
eco.lsa                 Local spatial analysis
eco.malecot             Global and local kinship analyses
eco.mantel              Mantel and partial Mantel tests, with
                        truncation option
eco.merge               Merging two ecogen objects. Ordering the rows
                        of an ecogen object according to the rows of
                        another
eco.order               Functions deprecated in EcoGenetics version
                        1.2.0-2
eco.pairtest            Kruskall - Wallis + Wilcoxon (Mann-Whitney U)
                        and aov + Tukey-HSD tests for an ecogen object
eco.plotCorrelog        eco.plotCorrelog
eco.plotCorrelogB       eco.plotCorrelogB
eco.plotGlobal          GSA plot methods
eco.plotLocal           eco.plotLocal
eco.plotWeight          Plot for a connection network
eco.post.geneland       Log posterior probability plot for Geneland
                        repetitions with fixed K
eco.rankplot            Rankplot graphs
eco.rasterplot          rasterplot graphs
eco.rasterplot,eco.multilsa-method
                        rasterplot graph for eco.lsa results
eco.rbind               Combining the rows of two ecogen objects
eco.remove              Creating an updated ecogen object by removing
                        results of the slot OUT
eco.slide.con           Sliding window along a network
eco.slide.matrix        Sliding window for matrix data
eco.split               Splitting an ecogen object by groups
eco.subset              Subsetting an ecogen object by group
eco.theilsen            Theil-sen regression for a raster time series
eco.variogram           Empirical variogram
eco.weight              Spatial weights
eco2                    Eco2
eco3                    Eco3
ecogen                  Creating a new ecogen object
ecogen2geneland         Creating input data for Geneland with an ecogen
                        object
ecogen2genepop          Exporting an ecogen genetic data frame into
                        Genepop format
ecogen2genind           Conversion form ecogen to genind and genind to
                        ecogen
ecogen2gstudio          Conversion from ecogen to gstudio and gstudio
                        to ecogen
ecogen2hierfstat        Converting an ecogen genetic data frame into a
                        hierfstat data frame
ecogen2spagedi          Exporting an ecogen genetic data frame into
                        SPAGeDi format
environment             environment
genepop2ecogen          Importing a Genepop file
genotype                genotype
grf.multiplot           Multiple plot function for ggplot
grf.seqmultiplot        Plot a ggplot sequence in layers of n plots
                        arranged in k rows
phenotype               phenotype
plot,eco.multilsa,ANY-method
                        plot eco.multilsa
spagedi2ecogen          Importing a SPAGeDi file, via conversion to
                        ecogen
structure               structure
summary,eco.mlm-method
                        Summary for eco.lmtree output
tab                     tab
table.sokal             table.sokal
