DLMtool-package	DLMtool-package
Albacore	Albacore
alphaconv	alphaconv
Atlantic_mackerel	Atlantic_mackerel
avail	avail
AvC	AvC
barplot.MSE	barplot.MSE
betaconv	betaconv
BK	BK
BK_CC	BK_CC
BK_ML	BK_ML
BlankSelPlot	BlankSelPlot
Bluefin_tuna	Bluefin_tuna
Bluefin_tuna_WAtl	Bluefin_tuna_WAtl
Blue_shark	Blue_shark
boxplot.DLM_data	boxplot.DLM_data
boxplot.MSE	boxplot.MSE
Butterfish	Butterfish
Can	Can
Cant	Cant
CC1	CC1
CC4	CC4
CheckConverg	CheckConverg
checkMSE	checkMSE
China_rockfish	China_rockfish
ChooseEffort	ChooseEffort
ChooseSelect	ChooseSelect
Cobia	Cobia
CompSRA	CompSRA
CompSRA4010	CompSRA4010
condmet	condmet
Converge	Converge
Cplot	Cplot
CSRA	CSRA
CSRAfunc	CSRAfunc
curE	curE
curE75	curE75
cv	cv
DAAC	DAAC
DBSRA	DBSRA
DBSRA4010	DBSRA4010
DBSRA_40	DBSRA_40
DBSRA_ML	DBSRA_ML
DCAC	DCAC
DCAC4010	DCAC4010
DCAC_40	DCAC_40
DCAC_ML	DCAC_ML
DD	DD
DD4010	DD4010
DDe	DDe
DDe75	DDe75
DDes	DDes
DecE_Dom	DecE_Dom
DecE_HDom	DecE_HDom
DecE_NDom	DecE_NDom
DepF	DepF
DLMDataDir	DLMDataDir
DLMtool	DLMtool-package
DLM_data-class	DLM_data-class
DLM_fease-class	DLM_fease-class
DOM	DOM
doprojPI	doprojPI
doprojPI_cpp	doprojPI_cpp
DTe40	DTe40
DTe50	DTe50
DynF	DynF
EtargetLopt	EtargetLopt
Example_datafile	Example_datafile
Fadapt	Fadapt
Fdem	Fdem
Fdem_CC	Fdem_CC
Fdem_ML	Fdem_ML
Fease	Fease
Fease_xl	Fease_xl
Feasibility	Feasibility
Feasibility2	Feasibility2
FlatE_Dom	FlatE_Dom
FlatE_HDom	FlatE_HDom
FlatE_NDom	FlatE_NDom
Fleet-class	Fleet-class
FMSYopt	FMSYopt
FMSYref	FMSYref
FMSYref50	FMSYref50
FMSYref75	FMSYref75
Fratio	Fratio
Fratio4010	Fratio4010
Fratio_CC	Fratio_CC
Fratio_ML	Fratio_ML
GB_CC	GB_CC
GB_slope	GB_slope
GB_target	GB_target
Gcontrol	Gcontrol
Generic_DecE	Generic_DecE
Generic_FlatE	Generic_FlatE
Generic_fleet	Generic_fleet
Generic_IncE	Generic_IncE
Generic_obs	Generic_obs
genLenComp	genLenComp
getAFC	getAFC
getclass	getclass
getEffhist	getEffhist
getFMSY	getFMSY
getFMSY2	getFMSY2
getFref	getFref
getFref2	getFref2
getmov	getmov
getmov2	getmov2
getq	getq
getq2	getq2
getroot	getroot
getSlope1	getSlope1
getSlope2	getSlope2
getSlopeFun	getSlopeFun
gettempvar	gettempvar
Gulf_blue_tilefish	Gulf_blue_tilefish
HDAAC	HDAAC
Herring	Herring
Imprecise_Biased	Imprecise_Biased
Imprecise_Unbiased	Imprecise_Unbiased
IncE_Dom	IncE_Dom
IncE_HDom	IncE_HDom
IncE_NDom	IncE_NDom
initialize,DLM_data-method	initialize-methods
initialize,DLM_fease-method	initialize-methods
initialize,DLM_general-method	initialize-methods
initialize,Fleet-method	initialize-methods
initialize,lmmodel-method	initialize-methods
initialize,MSE-method	initialize-methods
initialize,Observation-method	initialize-methods
initialize,OM-method	initialize-methods
initialize,Stock-method	initialize-methods
initialize-methods	initialize-methods
Input	Input
Islope1	Islope1
Islope4	Islope4
IT10	IT10
IT5	IT5
Itarget1	Itarget1
Itarget4	Itarget4
ItargetE1	ItargetE1
ItargetE4	ItargetE4
ITe10	ITe10
ITe5	ITe5
ITM	ITM
joinMSE	joinMSE
Jplot	Jplot
Kplot	Kplot
L2A	L2A
L95target	L95target
LBSPR	LBSPR
LBSPR_ItEff	LBSPR_ItEff
LBSPR_ItSel	LBSPR_ItSel
LBSPR_ItTAC	LBSPR_ItTAC
lmmodel-class	lmmodel-class
Low_Effort_Non_Target	Low_Effort_Non_Target
LstepCC1	LstepCC1
LstepCC4	LstepCC4
LstepCE1	LstepCE1
LstepCE2	LstepCE2
Ltarget1	Ltarget1
Ltarget4	Ltarget4
LtargetE1	LtargetE1
LtargetE4	LtargetE4
Mackerel	Mackerel
makePerf	makePerf
makeTransparent	makeTransparent
matlenlim	matlenlim
matlenlim2	matlenlim2
MCD	MCD
MCD4010	MCD4010
mconv	mconv
minlenLopt1	minlenLopt1
ML2D	ML2D
movfit	movfit
movfit_Rcpp	movfit_Rcpp
MPStats	MPStats
MRnoreal	MRnoreal
MRreal	MRreal
MSE-class	MSE-class
mypars	mypars
NAor0	NAor0
Needed	Needed
NFref	NFref
NOAA_plot	NOAA_plot
Observation-class	Observation-class
OM-class	OM-class
OM_xl	OM_xl
OneRep	OneRep
optQ_cpp	optQ_cpp
ourReefFish	ourReefFish
Perfect_Info	Perfect_Info
plot,DLM_data-method	plot-DLM_data
plot,MSE-method	plot-MSE
plotFun	plotFun
plotOFL	plotOFL
Porgy	Porgy
Pplot	Pplot
Pplot2	Pplot2
Precise_Biased	Precise_Biased
Precise_Unbiased	Precise_Unbiased
projOpt_cpp	projOpt_cpp
qopt	qopt
Range	Range
range01	Range
Rcontrol	Rcontrol
Rcontrol2	Rcontrol2
Red_snapper	Red_snapper
replic8	replic8
Required	Required
Rockfish	Rockfish
runInMP	runInMP
runMSE	runMSE
runMSErobust	runMSErobust
Sam	Sam
sampy	sampy
SBT1	SBT1
SBT2	SBT2
sdconv	sdconv
SelectFun	SelectFun
Sense	Sense
SetRecruitCycle	SetRecruitCycle
setup	setup
Simulation_1	Simulation_1
SketchFun	SketchFun
slotlim	slotlim
Snapper	Snapper
Sole	Sole
Splot	Splot
SPmod	SPmod
SPMSY	SPMSY
SPslope	SPslope
SPSRA	SPSRA
SPSRA_ML	SPSRA_ML
Stock-class	Stock-class
Sub	Sub
summary,DLM_data-method	summary-DLM_data
summary,MSE-method	summary-MSE
TAC	TAC
TACfilter	TACfilter
Targeting_Small_Fish	Targeting_Small_Fish
Target_All_Fish	Target_All_Fish
tdlnorm	tdlnorm
Toothfish	Toothfish
Tplot	Tplot
Tplot2	Tplot2
TradePlot	TradePlot
trlnorm	trlnorm
TwoSidedFun	TwoSidedFun
updateMSE	updateMSE
VOI	VOI
VOI2	VOI2
VOIplot	VOIplot
wormplot	wormplot
writeCSV	writeCSV
YPR	YPR
YPR_CC	YPR_CC
YPR_ML	YPR_ML
