| BoSSA-package | a Bunch of Structure and Sequence Analysis |
| BoSSA | a Bunch of Structure and Sequence Analysis |
| pplace | a placement object as obtained with the read_sqlite function |
| pplace_to_matrix | pplace to contingency matrix |
| pplace_to_table | merge the multiclass and the placement table of pplace object |
| pplace_tree | plot a pplace object |
| read_pdb | read Protein Data Bank (PDB) file |
| read_sqlite | read a pplacer/guppy sqlite file |
| sub_pplace | subsets a pplace object |