![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| wiqid-package | Fast, simple estimation functions for wildlife population models |
| acfPlot | Diagnostic graphics for MCMC output |
| AICc | Akaike's Information Criterion with small-sample correction - AICc |
| AICtable | Make a table for AIC or other criterion |
| allCombinations | Create formulae for all combinations of covariates |
| as.Bwiqid | Conversion to class Bwiqid |
| as.Bwiqid.bugs | Conversion to class Bwiqid |
| as.Bwiqid.data.frame | Conversion to class Bwiqid |
| as.Bwiqid.default | Conversion to class Bwiqid |
| as.Bwiqid.mcmc.list | Conversion to class Bwiqid |
| as.Bwiqid.rjags | Conversion to class Bwiqid |
| as.Bwiqid.runjags | Conversion to class Bwiqid |
| Bbinom | Bayesian analysis of binomial data |
| Bbinomial | Bayesian analysis of binomial data |
| BetaDist | The Beta Distribution |
| biodBerger | Biodiversity indices |
| biodBrillouin | Biodiversity indices |
| biodShannon | Biodiversity indices |
| biodSimpson | Biodiversity indices |
| Bnormal | Bayesian modelling of a normal (Gaussian) distribution |
| Bnormal2 | Bayesian modelling of a normal (Gaussian) distribution |
| BoccSS | Bayesian single-season occupancy modelling |
| BoccSS0 | Bayesian single-season occupancy modelling |
| Bpoisson | Bayesian analysis of count data |
| Bsecr0 | Spatially explicit capture-recapture (secr) density estimation using MCMC |
| BsurvCJS | Survival from recapture data with Cormack-Jolly-Seber (CJS) model |
| Bwiqid-class | Conversion to class Bwiqid |
| closedCapM0 | Analysis of mark-recapture data for closed populations |
| closedCapMb | Analysis of mark-recapture data for closed populations |
| closedCapMh2 | Analysis of mark-recapture data for closed populations |
| closedCapMhJK | Analysis of mark-recapture data for closed populations |
| closedCapMt | Analysis of mark-recapture data for closed populations |
| closedCapMtcov | Analysis of mark-recapture data for closed populations |
| crosscorrPlot | Plot image of correlation matrix |
| dbeta2 | The Beta Distribution |
| dbeta3 | The Beta Distribution |
| densityFolded | Folded kernel density estimation |
| densityPlot | Diagnostic graphics for MCMC output |
| dgamma2 | The Gamma Distribution |
| diagnostic plots | Diagnostic graphics for MCMC output |
| diagPlot | Diagnostic graphics for MCMC output |
| dippers | Capture-recapture data for European dippers |
| Distance Measures | Plug-in distance-measure functions for 'distShell'. |
| distBrayCurtis | Plug-in distance-measure functions for 'distShell'. |
| distChaoJaccCorr | Plug-in distance-measure functions for 'distShell'. |
| distChaoJaccNaive | Plug-in distance-measure functions for 'distShell'. |
| distChaoSorCorr | Plug-in distance-measure functions for 'distShell'. |
| distChaoSorNaive | Plug-in distance-measure functions for 'distShell'. |
| distChord | Plug-in distance-measure functions for 'distShell'. |
| distJaccard | Plug-in distance-measure functions for 'distShell'. |
| distMatching | Plug-in distance-measure functions for 'distShell'. |
| distMorisitaHorn | Plug-in distance-measure functions for 'distShell'. |
| distOchiai | Plug-in distance-measure functions for 'distShell'. |
| distPreston | Plug-in distance-measure functions for 'distShell'. |
| distRogersTanimoto | Plug-in distance-measure functions for 'distShell'. |
| distShell | Distance Matrix Computation |
| distSimRatio | Plug-in distance-measure functions for 'distShell'. |
| distSorensen | Plug-in distance-measure functions for 'distShell'. |
| distTestData | An artificial data set to test distance/dissimilarity measures |
| distWhittaker | Plug-in distance-measure functions for 'distShell'. |
| Diversity indices | Biodiversity indices |
| dt2 | The Generalized Student's t Distribution |
| dt3 | The Generalized Student's t Distribution |
| GammaDist | The Gamma Distribution |
| getBeta2Par | The Beta Distribution |
| getBeta3Par | The Beta Distribution |
| getGammaPar | The Gamma Distribution |
| getMCerror | MCMC error using the batch method |
| GrandSkinks | Multi-season detection data for grand skinks |
| KanhaTigers | Capture history matrix for camera-trapped tigers |
| KillarneyBirds | Abundance of woodland birds |
| Links | Logit and probit links for generalised linear modelling |
| links | Logit and probit links for generalised linear modelling |
| MeadowVoles | Robust design mark-recapture data for meadow voles |
| occ2sps | Single-season two-species occupancy estimation |
| occMS | Multi-season occupancy estimation |
| occMS0 | Multi-season occupancy estimation |
| occMScovSite | Multi-season occupancy estimation |
| occMStime | Multi-season occupancy estimation |
| occSS | Single-season occupancy estimation |
| occSS0 | Single-season occupancy estimation |
| occSScovSite | Single-season occupancy estimation |
| occSSrn | Royle-Nichols model for single-season occupancy estimation |
| occSSrn0 | Royle-Nichols model for single-season occupancy estimation |
| occSSrnSite | Royle-Nichols model for single-season occupancy estimation |
| occSStime | Single-season occupancy estimation |
| pbeta2 | The Beta Distribution |
| pbeta3 | The Beta Distribution |
| pgamma2 | The Gamma Distribution |
| plot.Bwiqid | Plot method for objects of class 'Bwiqid' |
| plotComb | Display a posterior probability distribution from the comb method |
| plotPost | Graphic display of a posterior probability distribution |
| postPriorOverlap | Overlap between posterior and prior probability distributions. |
| predict.wiqid | Predict method for objects of class 'wiqid' |
| print.Bwiqid | Print and summary methods for objects of class 'Bwiqid' |
| Priors | Standardisation and priors |
| pt2 | The Generalized Student's t Distribution |
| pt3 | The Generalized Student's t Distribution |
| qbeta2 | The Beta Distribution |
| qbeta3 | The Beta Distribution |
| qgamma2 | The Gamma Distribution |
| qt2 | The Generalized Student's t Distribution |
| qt3 | The Generalized Student's t Distribution |
| railSims | Simulated detection/non-detection data for two species of rails |
| rbeta2 | The Beta Distribution |
| rbeta3 | The Beta Distribution |
| rgamma2 | The Gamma Distribution |
| richACE | Species richness estimators |
| richBoot | Species richness estimators |
| richChao1 | Species richness estimators |
| richChao2 | Species richness estimators |
| richCurve | Species richness estimates based on accumulation curves |
| richDouble | Species richness estimates based on accumulation curves |
| richDuplicate | Species richness estimates based on accumulation curves |
| richICE | Species richness estimators |
| richJack1 | Species richness estimators |
| richJack2 | Species richness estimators |
| richJackA1 | Species richness estimators |
| richJackA2 | Species richness estimators |
| richMM | Species richness estimators |
| richRarefy | Sample-based rarefaction curves |
| richRenLau | Species richness estimators |
| richSingle | Species richness estimates based on accumulation curves |
| richSobs | Species richness estimates based on accumulation curves |
| richUnique | Species richness estimates based on accumulation curves |
| rt2 | The Generalized Student's t Distribution |
| rt3 | The Generalized Student's t Distribution |
| salamanders | Occupancy data for blue ridge salamanders |
| secrFit | Spatially Explicit Capture-Recapture |
| seedbank | Seed abundances in soil samples |
| showShinyApp | Display a 'shiny' application |
| simpleRhat | The Brooks-Gelman-Rubin (BGR) convergence diagnostic |
| Species richness estimators | Species richness estimators |
| Standardisation | Standardisation and priors |
| Standardization | Standardisation and priors |
| standardize | Scaling and centring of vectors, matrices and arrays |
| standardize2match | Scaling and centring of vectors, matrices and arrays |
| summary.Bwiqid | Print and summary methods for objects of class 'Bwiqid' |
| survCJS | Survival from recapture data with Cormack-Jolly-Seber (CJS) model |
| survCJSaj | Survival from recapture data with Cormack-Jolly-Seber (CJS) model |
| survRD | Survival from mark-recapture data with robust design |
| survRDah | Survival from mark-recapture data with robust design |
| TDist | The Generalized Student's t Distribution |
| Temburong | Tree species count data |
| TemburongBA | Tree species count data |
| tracePlot | Diagnostic graphics for MCMC output |
| WAIC | Extract the Watanabe-Akaike Information Criterion (WAIC) |
| weta | Detection data for weta in gorse bushes |
| window.Bwiqid | Time windows for 'Bwiqid' objects |
| wiqid | Fast, simple estimation functions for wildlife population models |
| wiqid-class | The 'wiqid' S3 class |