Handling Vegetation Data Sets

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Documentation for package ‘vegtable’ version 0.1.5

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$-method Select or replace elements in objects.
$<- Select or replace elements in objects.
$<--method Select or replace elements in objects.
add_releves Merge relevés from data frames into vegtable objects.
add_releves-method Merge relevés from data frames into vegtable objects.
aggregate Aggregating information into a data frame.
aggregate-method Aggregating information into a data frame.
as.list Coerce an S4 object to a list.
as.list-method Coerce an S4 object to a list.
aspect_conv Conversion of Aspect Classes to Azimuth
aspect_conv-data Conversion of Aspect Classes to Azimuth
braun_blanquet Conversion of Braun-Blanquet codes to cover percentage.
braun_blanquet-data Conversion of Braun-Blanquet codes to cover percentage.
clean Clean orphaned records in vegtable object.
clean-method Clean orphaned records in vegtable object.
count_taxa Count taxa within a taxlist object
count_taxa-method Count taxa within a taxlist object
coverconvert Cover conversion tables.
coverconvert-class Cover conversion tables.
cross2db Generating cross tables from database lists.
crosstable Generating cross tables from database lists.
crosstable-method Generating cross tables from database lists.
df2vegtable Convert a data frame into a vegtable object.
df2vegtable-method Convert a data frame into a vegtable object.
dimnames Retrieve names of vegtable and coverconvert objects.
dimnames-method Retrieve names of vegtable and coverconvert objects.
dune_veg Dutch Dune Meadows.
dune_veg-data Dutch Dune Meadows.
header Retrieve or replace slot header in 'vegtable' objects.
header-method Retrieve or replace slot header in 'vegtable' objects.
header<- Retrieve or replace slot header in 'vegtable' objects.
header<--method Retrieve or replace slot header in 'vegtable' objects.
Kenya_veg Vegetation-Plots from Kenya.
Kenya_veg-data Vegetation-Plots from Kenya.
layers2samples Add information from slot 'layers' into slot 'samples'.
layers2samples-method Add information from slot 'layers' into slot 'samples'.
make_cocktail Produce a Cocktail classification.
make_cocktail-method Produce a Cocktail classification.
match_names Search matchings between character and taxlist objects.
match_names-method Search matchings between character and taxlist objects.
merge_taxa Merge concepts.
merge_taxa-method Merge concepts.
names Retrieve names of vegtable and coverconvert objects.
names-method Retrieve names of vegtable and coverconvert objects.
names<- Retrieve names of vegtable and coverconvert objects.
names<--method Retrieve names of vegtable and coverconvert objects.
read_juice Importing 'Juice' tables.
relation2header Retrieve or replace relations in vegtable objects.
relation2header-method Retrieve or replace relations in vegtable objects.
set_formula Produce a Cocktail classification.
set_formula-method Produce a Cocktail classification.
set_group Produce a Cocktail classification.
set_group-method Produce a Cocktail classification.
set_pseudo Produce a Cocktail classification.
set_pseudo-method Produce a Cocktail classification.
shaker Class containing Cocktail algorithms.
shaker-class Class containing Cocktail algorithms.
subset Subset functions for vegtable objects.
subset-method Subset functions for vegtable objects.
summary Summary method for vegtable objects.
summary-method Summary method for vegtable objects.
taxa2samples Merge concepts.
taxa2samples-method Merge concepts.
trait_proportion Statistics and proportion for taxon traits
trait_proportion-method Statistics and proportion for taxon traits
trait_stats Statistics and proportion for taxon traits
trait_stats-method Statistics and proportion for taxon traits
transform Convert cover scales to percent cover.
transform-method Convert cover scales to percent cover.
tv2coverconvert Importing conversion tables from 'Turboveg' databases.
tv2vegtable Import vegetation data from a 'Turboveg' databases.
used_synonyms Retrieve synonyms used in the data set.
used_synonyms-method Retrieve synonyms used in the data set.
vegtable Class vegtable.
vegtable-class Class vegtable.
vegtable2kml Mapping of plot observations.
vegtable2kml-method Mapping of plot observations.
vegtable_stat General statistics from vegtable objects.
veg_relation Retrieve or replace relations in vegtable objects.
veg_relation-method Retrieve or replace relations in vegtable objects.
veg_relation<- Retrieve or replace relations in vegtable objects.
veg_relation<--method Retrieve or replace relations in vegtable objects.
Wetlands Vegetation-plots from Tanzania.
Wetlands-data Vegetation-plots from Tanzania.
Wetlands_veg Vegetation-plots from Tanzania.
Wetlands_veg-data Vegetation-plots from Tanzania.
write_juice Exporting Tables for 'Juice'.
write_juice-method Exporting Tables for 'Juice'.
[-method Select or replace elements in objects.
[<- Select or replace elements in objects.
[<--method Select or replace elements in objects.