| as.data.frame | Convert a 'Map' Object to a Data Frame |
| as.Map | Convert a Data Frame to a 'Map' Object. |
| as.Map-method | Convert a Data Frame to a 'Map' Object. |
| bov80K | A 'Map' object with 80K bovine SNPs |
| Chrom | The Chromosome class |
| Chrom-class | The Chromosome class |
| Locus | The Locus class |
| Locus-class | The Locus class |
| Map | The Map class |
| Map-class | The Map class |
| namesOfChrom | Extract chromosome indexes or names |
| namesOfChrom,Chrom | Extract chromosome indexes or names |
| namesOfChrom,Map | Extract chromosome indexes or names |
| namesOfChrom-method | Extract chromosome indexes or names |
| newMap | Create a new 'Map' object. |
| newMap,character | Create a new 'Map' object. |
| newMap,data.frame | Create a new 'Map' object. |
| newMap-method | Create a new 'Map' object. |
| numberOfLoci | Extract the number of loci on each chromosome |
| numberOfLoci,Chrom | Extract the number of loci on each chromosome |
| numberOfLoci,Map | Extract the number of loci on each chromosome |
| numberOfLoci-method | Extract the number of loci on each chromosome |
| plotMap | Plotting a Map object. |
| plotMap-method | Plotting a Map object. |
| scoreE | Compute the E score |
| scoreE,Chrom-methods | Compute the E score |
| scoreE-method | Compute the E score |
| scoreLocal | Compute the weighted local score |
| scoreLocal-method | Compute the weighted local score |
| scoreU | Compute the Uniformness(U) score |
| scoreU-method | Compute the Uniformness(U) score |
| selectLocalOptimalSNPs | Select locally-optimized SNPs on one or more chromosomes |
| selectLocalOptimalSNPs-method | Select locally-optimized SNPs on one or more chromosomes |
| summary | Summary statiscs for a Map object. |