Fitting Discrete Distribution Models to Count Data

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Documentation for package ‘scModels’ version 1.0.1

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chf_1F1 Kummer's (confluent hypergeometric) function
dpb Poisson-beta Distribution
fit_params Functions to estimate parameters of probability distributions by fitting the distributions using optim()
gmRNA Gillespie algorithm for mRNA generating processes
gmRNA_basic Gillespie algorithm for mRNA generating processes
gmRNA_burst Gillespie algorithm for mRNA generating processes
gmRNA_switch Gillespie algorithm for mRNA generating processes
nlogL Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_nb Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_nb2 Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_pb Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_pb2 Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_pois Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_pois2 Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_zinb Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_zinb2 Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_zipb Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_zipb2 Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_zipois Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
nlogL_zipois2 Negative log Likelihood functions for Poisson, negative binomial and Poisson-beta distributions
Poisson-beta Poisson-beta Distribution
ppb Poisson-beta Distribution
qpb Poisson-beta Distribution
rpb Poisson-beta Distribution