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| rdiversity-package | rdiversity |
| chainsaw | Function to cut phylogeny from present day species to a specified depth. |
| check_partition | Check partition matrix |
| check_phypartition | check_phypartition |
| check_similarity | Check similarity matrix |
| get_title | Get title |
| hs_parameters | Historical species parameters |
| inddiv | Calculate individual-level diversity |
| inddiv-method | Calculate individual-level diversity |
| is.metacommunity | Coerce to 'metacommunity' |
| is.powermean | Calculate power mean |
| is.relativeentropy | Calculate relative entropy |
| metacommunity | Coerce to 'metacommunity' |
| metacommunity-class | metacommunity-class |
| metacommunity-method | Coerce to 'metacommunity' |
| metadiv | Calculate metacommunity-level diversity |
| metadiv-method | Calculate metacommunity-level diversity |
| meta_gamma | Metacommunity gamma diversity |
| norm_alpha | Normalised alpha (low level diversity component) |
| norm_beta | Normalised beta (low level diversity component) |
| norm_meta_alpha | Normalised metacommunity alpha diversity |
| norm_meta_beta | Normalised metacommunity beta diversity |
| norm_meta_rho | Normalised metacommunity rho diversity |
| norm_rho | Normalised rho (low level diversity component) |
| norm_sub_alpha | Normalised subcommunity alpha diversity |
| norm_sub_beta | Normalised subcommunity beta diversity |
| norm_sub_rho | Normalised subcommunity rho diversity |
| phy_abundance | Calculate abundance of historical species |
| phy_struct | Calculate phylogenetic structure matrix |
| plot_diversity | Plot diversity |
| powermean | Calculate power mean |
| powermean-class | powermean-class |
| power_mean | Power mean of vector elements |
| qD | Hill number / naive diversity with no similarity |
| qDZ | Similarity-sensitive diversity |
| qDZ_single | Similarity-sensitive diversity of a single population |
| qD_single | Hill number / naive diversity of a single population |
| raw_alpha | Raw alpha (low level diversity component) |
| raw_beta | Raw beta (low level diversity component) |
| raw_gamma | Gamma (low level diversity component) |
| raw_meta_alpha | Raw metacommunity alpha diversity |
| raw_meta_beta | Raw metacommunity beta diversity |
| raw_meta_rho | Raw metacommunity rho diversity |
| raw_rho | Raw rho (low level diversity component) |
| raw_sub_alpha | Raw subcommunity alpha diversity |
| raw_sub_beta | Raw subcommunity beta diversity |
| raw_sub_rho | Raw subcommunity rho diversity |
| rdiversity | rdiversity |
| relativeentropy | Calculate relative entropy |
| relativeentropy-class | relativeentropy-class |
| repartition | Repartition metacommunity |
| show-method | metacommunity-class |
| show-method | Calculate power mean |
| show-method | Calculate relative entropy |
| similarity_shimatani | Taxonomic similarity matrix |
| smatrix | Phylogenetic similarity matrix (ultrametric) |
| subdiv | Calculate subcommunity-level diversity |
| subdiv-method | Calculate subcommunity-level diversity |
| sub_gamma | Subcommunity gamma diversity |
| summarise | Summary function |
| tbar | Calculate T_bar |
| zmatrix | Similarity matrix |