![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| osmose-package | OSMOSE: Modelling Marine Exploited Ecosystems |
| configureCalibration | Reads calibration parameters from an osmose.config list. |
| getAverageMortality | Computes the average mortality. |
| getFishingBaseRate | Get fishing base rate. |
| getFishingBaseRate.byDt | Get fishing base rate using time-step rates. |
| getFishingBaseRate.byYear | Get fishing base rate using annual rates. |
| getFishingBaseRate.constant | Get fishing base rate using constant rate |
| getFishingBaseRate.linear | Get fishing base rate using a linear rate |
| getFishingMortality | Get fishing mortality rate. |
| getMortality | Get the total mortality rate. |
| getMortalityDeviation | Computes the mortality deviation. The "proxy", which is removed, can be provided by the user in the "pars" argument. |
| getOsmoseParameter | Get a parameter from a name chain (error if not found). |
| getSizeSpectrum | Get size spectrum |
| getVar | Get variable |
| getVar.osmose | GetVar method for osmose objects |
| osmose | OSMOSE: Modelling Marine Exploited Ecosystems |
| osmose2R | Read OSMOSE outputs into an R object |
| plot.osmose | Plot method for osmose objects |
| print.osmose | Print informations about Osmose outputs |
| print.summary.osmose | Print the summary informations about Osmose outputs |
| readOsmoseConfiguration | Reads Osmose configuration files. |
| readOsmoseFiles | Read Osmose output file |
| read_osmose | Read OSMOSE outputs into an R object |
| runOsmose | Run an OSMOSE configuration |
| summary.osmose | Summarizes informations about Osmose outputs |
| write.osmose | Write an array or dataframe in the Osmose format. The separator is ";", there are no quotes and a blank column is added for the row names column. |
| writeFishingFiles | Write fishing files from osmose configuration list. |