Genetics and Independence Testing of Mixed Genetic Panels

Documentation for package ‘mixIndependR’ version 0.2.0

AlleleFreq	Calculate Allele Frequency
AlleleShare_Table	Calculate numbers of sharing alleles each pair at each locus
ComposPare_K	Generate Comparison Observed and Expected No. of Heterozygous Loci.
ComposPare_X	Generate Comparison Observed and Expected No. of Shared Alleles.
counta	Simple count including zero###
DistAlleleShare	Build Expected Distribution of Numbers of Shared Alleles
DistHetero	Build Expected Distribution of Numbers of Heterozygous Loci
Dist_SimuChisq	Build a simulated distribution for Chi-Square
ExpProAlleleShare	Calculate the Expected Probability of 0,1 and 2 Shared Alleles###
FreqAlleleShare	Build Observed Distribution of No. of Shared Alleles
FreqHetero	Build Observed Distribution of No. of Heterozygous loci
GenotypeFreq	Calculate Genotype Frequency###
Heterozygous	Test heterozygosity at each locus
HWE.Chisq	Test the Hardy Weinberg Equilibrium with Chi-square test####
HWE.Fisher	Test the Hardy Weinberg Equilibrium with Fisher's exact test###
RealProAlleleShare	Calculate the Real Probability of 0,1 and 2 Shared Alleles###
RxpHetero	Calculate Real or Expected Average Heterozygosity at each locus
Simulate_DistK	Generate a Bundle of Simulated distributions for No. of heterozygous loci with known heterozygosites
Simulate_DistX	Build a simulated distribution for No. of Shared Alleles