| CovarMatrix | CovarMatrix |
| CovMat | CovMat |
| ExpectMat | ExpectMat |
| H.sire | testdata: sire haplotypes |
| Haplo2Geno | Haplo2Geno |
| LDdam | LDdam |
| LDsire | LDsire |
| matLD | testdata: maternal linkage disequilibrium |
| pos.chr | testdata: genetic map positions |
| tagSNP | tagSNP |
| testdata | Description of the testdata |