| add_nodes_attr | Add attributes to the nodes of a graph |
| compar_r_fisher | Compare two correlation coefficients obtained from different sample sizes |
| convert_cd | Fit a model to convert cost-distances into Euclidean distances |
| data_pc_genind | data_pc_genind genetic dataset |
| data_pc_gpop | data_pc_gpop genetic dataset |
| data_pc_gstud | data_pc_gstud genetic dataset |
| data_pc_loci | data_pc_loci genetic dataset |
| data_pc_str | data_pc_str genetic dataset |
| data_simul_genind | data_simul_genind genetic dataset |
| data_tuto | data_tuto : data used to generate the vignette |
| df_to_pw_mat | Convert an edge-list data.frame into a pairwise matrix |
| dist_max_corr | Compute the distance at which the correlation between genetic distance and landscape distance is maximal |
| genepop_to_genind | Convert a GENEPOP file into a genind object |
| genind_to_genepop | Convert a genind object into a GENEPOP file |
| gen_graph_indep | Create an independence graph of genetic differentiation from genetic data of class genind |
| gen_graph_thr | Create a graph of genetic differentiation using a link weight threshold |
| gen_graph_topo | Create a graph of genetic differentiation with a specific topology |
| graphab_to_igraph | Import landscape graphs from GRAPHAB software |
| graph_modul_compar | Compare the partition into modules of two graphs |
| graph_node_compar | Compare the local properties of the nodes from two graphs |
| graph_plan | Create a graph with a minimum planar graph topology |
| graph_plot_compar | Visualize the topological differences between two spatial graphs on a map |
| graph_topo_compar | Compute an index comparing graph topologies |
| graph_to_df | Convert a graph into a edge list data.frame |
| graph_to_shp | Export a spatial graph to shapefile layers |
| gstud_to_genind | Convert a file from 'gstudio' or 'popgraph' into a genind object |
| g_percol | Prune a graph using the 'percolation threshold' method |
| kernel_param | Compute dispersal kernel parameters |
| loci_to_genind | Convert a loci object into a genind object |
| mat_gen_dist | Compute a pairwise matrix of genetic distances between populations |
| mat_geo_dist | Compute Euclidean geographic distances between points |
| mat_pw_dps | Compute a pairwise genetic distance matrix between populations using Bowcock et al. (1994) formula |
| mat_pw_d_j | Compute a pairwise Jost's D matrix between populations |
| mat_pw_fst | Compute a pairwise FST matrix between populations |
| mat_pw_gst | Compute a pairwise G'ST matrix between populations |
| plot_graph_lg | Plot graphs |
| plot_graph_modul | Plot the graphs making visible their partition into modules |
| plot_w_hist | Plot histograms of link weights |
| pop_gen_index | Compute population-level genetic indices |
| pts_pop_pc | pts_pop_pc : details on Setophaga plumbea populations |
| pts_pop_simul | pts_pop_simul : details on simulated populations |
| pw_mat_to_df | Convert a pairwise matrix into an edge-list data.frame |
| reorder_mat | Reorder the rows and columns of a symmetric matrix |
| scatter_dist | Plot scatterplots of genetic distance vs landscape distance |
| scatter_dist_g | Plot scatterplots of distances to visualize the graph pruning intensity |
| structure_to_genind | Convert a file in STRUCTURE format into a genind object |