Pairwise Distance Estimation with TKF91 and TKF92 Model

Documentation for package ‘TKF’ version 0.0.8

AACharacterSet	AA, DNA, RNA character set
AAGapCharacterSet	AA, DNA, RNA character set
AAToInt	AA, DNA, RNA character set
AmbiguousAACharacterSet	AA, DNA, RNA character set
AmbiguousAAGapCharacterSet	AA, DNA, RNA character set
Dayhoffn	PAM and Dayhoff matrices calculation
DNACharacterSet	AA, DNA, RNA character set
DNAGapCharacterSet	AA, DNA, RNA character set
GONNET	The GONNET AA matrix
GONNETBF	The GONNET AA matrix
optim.phylo.wls	Phylogeny inference using the weighted least squares method
PAMn	PAM and Dayhoff matrices calculation
RNACharacterSet	AA, DNA, RNA character set
RNAGapCharacterSet	AA, DNA, RNA character set
TKF91	Evolutionary distance estimation with TKF91 model
TKF91Pair	Evolutionary distance estimation with TKF91 model
TKF92	Evolutionary distance estimation with TKF92 model
TKF92HG	Evolutionary distance estimation with TKF92 model considering the regional heterogeneity of substitution rates
TKF92HGPair	Evolutionary distance estimation with TKF92 model considering the regional heterogeneity of substitution rates
TKF92Pair	Evolutionary distance estimation with TKF92 model