![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
A C D E F G H I L M N O P S T U V
| SEMID-package | SEMID package documentation. |
| ancestors | All ancestors of a collection of nodes |
| ancestors.MixedGraph | All ancestors of a collection of nodes |
| ancestors.MixedGraphFixedOrder | All ancestors of a collection of nodes |
| ancestralID | Determines which edges in a mixed graph are ancestralID-identifiable |
| ancestralIdentifyStep | Perform one iteration of ancestral identification. |
| createAncestralIdentifier | Create an ancestral identification function. |
| createEdgewiseIdentifier | Create an edgewise identification function |
| createHalfTrekFlowGraph | Helper function to create a flow graph. |
| createHalfTrekFlowGraph.MixedGraphFixedOrder | Helper function to create a flow graph. |
| createHtcIdentifier | Create an htc identification function. |
| createHtrGraph | Helper function to create a graph encoding htr relationships. |
| createHtrGraph.MixedGraphFixedOrder | Helper function to create a graph encoding htr relationships. |
| createIdentifierBaseCase | Create an identifier base case |
| createSimpleBiDirIdentifier | Identify bidirected edges if all directed edges are identified |
| createTrekFlowGraph | Helper function to create a flow graph. |
| createTrekFlowGraph.MixedGraphFixedOrder | Helper function to create a flow graph. |
| createTrekSeparationIdentifier | Create an trek separation identification function |
| createTrGraph | Helper function to create a graph encoding trek reachable relationships. |
| createTrGraph.MixedGraphFixedOrder | Helper function to create a graph encoding trek reachable relationships. |
| descendants | Get descendants of a node |
| descendants.MixedGraph | Get descendants of a node |
| descendants.MixedGraphFixedOrder | Get descendants of a node |
| edgewiseID | Determines which edges in a mixed graph are edgewiseID-identifiable |
| edgewiseIdentifyStep | Perform one iteration of edgewise identification. |
| edgewiseTSID | Determines which edges in a mixed graph are edgewiseID+TS identifiable |
| flowBetween | Flow from one set of nodes to another. |
| flowBetween.FlowGraph | Flow from one set of nodes to another. |
| FlowGraph | Construct FlowGraph object |
| generalGenericID | A general generic identification algorithm template. |
| getAncestors | Get getAncestors of nodes in a graph. |
| getDescendants | Get descendants of nodes in a graph. |
| getHalfTrekSystem | Determines if a half-trek system exists in the mixed graph. |
| getHalfTrekSystem.MixedGraph | Determines if a half-trek system exists in the mixed graph. |
| getHalfTrekSystem.MixedGraphFixedOrder | Determines if a half-trek system exists in the mixed graph. |
| getMaxFlow | Size of largest HT system Y satisfying the HTC for a node v except perhaps having |getParents(v)| < |Y|. |
| getMixedCompForNode | Get the mixed component of a node in a mixed subgraph. |
| getParents | Get getParents of nodes in a graph. |
| getSiblings | Get getSiblings of nodes in a graph. |
| getTrekSystem | Determines if a trek system exists in the mixed graph. |
| getTrekSystem.MixedGraph | Determines if a trek system exists in the mixed graph. |
| getTrekSystem.MixedGraphFixedOrder | Determines if a trek system exists in the mixed graph. |
| graphID | Identifiability of linear structural equation models. |
| graphID.ancestralID | Determine generic identifiability of an acyclic mixed graph using ancestral decomposition. |
| graphID.decompose | Determine generic identifiability by Tian Decomposition and HTC |
| graphID.genericID | Determine generic identifiability of a mixed graph. |
| graphID.globalID | Check for global identifiability of a mixed graph. |
| graphID.htcID | Determines if a mixed graph is HTC-identifiable. |
| graphID.main | Helper function to handle a graph component. |
| graphID.nonHtcID | Check for generic infinite-to-one via the half-trek criterion. |
| htcID | Determines which edges in a mixed graph are HTC-identifiable. |
| htcIdentifyStep | Perform one iteration of HTC identification. |
| htr | Get all HTR nodes from a set of nodes in a graph. |
| htrFrom | Half trek reachable nodes. |
| htrFrom.MixedGraph | Half trek reachable nodes. |
| htrFrom.MixedGraphFixedOrder | Half trek reachable nodes. |
| inducedSubgraph | Get the induced subgraph on a collection of nodes |
| inducedSubgraph.MixedGraph | Get the induced subgraph on a collection of nodes |
| isSibling | Are two nodes siblings? |
| isSibling.MixedGraph | Are two nodes siblings? |
| isSibling.MixedGraphFixedOrder | Are two nodes siblings? |
| L | Get adjacency matrix for directed part. |
| L.MixedGraph | Get adjacency matrix for directed part. |
| MixedGraph | Construct MixedGraph object |
| MixedGraphFixedOrder | Construct MixedGraphFixedOrder object |
| mixedGraphHasSimpleNumbering | Checks a MixedGraph has appropriate node numbering |
| nodes | Get all nodes in the graph. |
| nodes.MixedGraph | Get all nodes in the graph. |
| numNodes | Number of nodes in the graph. |
| numNodes.MixedGraph | Number of nodes in the graph. |
| numNodes.MixedGraphFixedOrder | Number of nodes in the graph. |
| O | Get adjacency matrix for bidirected part. |
| O.MixedGraph | Get adjacency matrix for bidirected part. |
| parents | All parents a collection of nodes. |
| parents.MixedGraph | All parents a collection of nodes. |
| parents.MixedGraphFixedOrder | All parents a collection of nodes. |
| plot.MixedGraph | Plots the mixed graph |
| plotMixedGraph | Plot a mixed graph |
| print.GenericIDResult | Prints a GenericIDResult object |
| print.SEMIDResult | Prints a SEMIDResult object |
| SEMID | SEMID package documentation. |
| semID | Identifiability of linear structural equation models. |
| siblings | All siblings of a collection of nodes |
| siblings.MixedGraph | All siblings of a collection of nodes |
| siblings.MixedGraphFixedOrder | All siblings of a collection of nodes |
| stronglyConnectedComponent | Strongly connected component |
| stronglyConnectedComponent.MixedGraph | Strongly connected component |
| stronglyConnectedComponent.MixedGraphFixedOrder | Strongly connected component |
| stronglyConnectedComponents | Strongly connected components |
| stronglyConnectedComponents.MixedGraphFixedOrder | Strongly connected components |
| subsetsOfSize | Returns all subsets of a certain size |
| tianComponent | Returns the Tian c-component of a node |
| tianComponent.MixedGraph | Returns the Tian c-component of a node |
| tianDecompose | Performs the tian decomposition on the mixed graph |
| tianDecompose.MixedGraph | Performs the tian decomposition on the mixed graph |
| tianIdentifier | Identifies components in a tian decomposition |
| tianSigmaForComponent | Globally identify the covariance matrix of a C-component |
| toEx | Transforms a vector of node indices in the internal rep. into external numbering |
| toEx.MixedGraph | Transforms a vector of node indices in the internal rep. into external numbering |
| toIn | Transforms a vector of given node indices into their internal numbering |
| toIn.MixedGraph | Transforms a vector of given node indices into their internal numbering |
| trekSeparationIdentifyStep | Perform one iteration of trek separation identification. |
| trFrom | Trek reachable nodes. |
| trFrom.MixedGraph | Trek reachable nodes. |
| trFrom.MixedGraphFixedOrder | Trek reachable nodes. |
| updateEdgeCapacities | Update edge capacities. |
| updateEdgeCapacities.FlowGraph | Update edge capacities. |
| updateVertexCapacities | Update vertex capacities. |
| updateVertexCapacities.FlowGraph | Update vertex capacities. |
| validateMatrices | A helper function to validate input matrices. |