| CollessLike-package | Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees |
| a.g.model | Generates a random tree |
| balance.indices | Computes Colles-like, Sackin and cophenetic balance indices of a phylogenetic tree. |
| colless.like.index | Computes the Colless-like balance index of a phylogenetic tree |
| CollessLike | Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees |
| cophen.index | Computes the cophenetic balance index of a phylogenetic tree |
| cophen.vector | Computes the cophenetic vector of a phylogenetic tree |
| distribution | Plot the distribution of Colless-Like, Sackin and cophenetic normalized balance indices under the alpha-gamma model and computes the percentile of a tree from previous distributions. |
| indices.simulation | Generates random trees and compute their balance indices |
| sackin.index | Computes the Sackin balance index of a phylogenetic tree |