CalcMaxMismatch | Maximum number of mismatches |
CalcOHLLR | calculate OH and LLR |
CheckGeno | check GenoM |
ComparePairs | Comparison of all pairwise relationships in 2 pedigrees |
DyadCompare | Compare dyads |
ErrToM | Generate error matrix |
EstConf | Estimate confidence probability |
FindFamilies | Assign family IDs |
GenoConvert | Convert genotype data |
getAssignCat | Assignability of reference pedigree |
GetMaybeRel | Find putative relatives |
GetRelCat | Pairwise relationship |
Inherit | Inheritance patterns |
LHConvert | Extract sex and birthyear from PLINK file |
LH_HSg5 | Example life history file |
MakeAgePrior | Age priors |
MkGenoErrors | Simulate genotyping errors |
PedCompare | Compare two Pedigrees |
PedPolish | Pedigree fix |
PedStripFID | backtransform IDs |
Ped_griffin | Example pedigree: griffins |
Ped_HSg5 | Example pedigree |
PlotAgePrior | Plot age priors |
SeqOUT_griffin | Example sequoia output (griffins) |
sequoia | Pedigree Reconstruction |
SimGeno | Simulated genotypes |
SimGeno_example | Example genotype file |
SnpStats | SNP summary statistics |
SummarySeq | Summarise sequoia output or pedigree |
writeColumns | write data to a file column-wise |
writeSeq | write sequoia output to excel or text files |