A Spatial Model of Intra-Tumor Heterogeneity


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Documentation for package ‘SITH’ version 1.0.1

Help Pages

SITH-package Visualize and analyze intratumor heterogeneity using a spatial model of tumor growth
bulkSample Simulate bulk sampling
plotSlice 2D cross section of the simulated tumor
randomBulkSamples Simulate multi-region bulk sampling
randomNeedles Simulate fine needle aspiration
randomSingleCells Simulate single cell sequencing data
simulateTumor Spatial simulation of tumor growth
singleCell Simulate single cell sequencing data
SITH Visualize and analyze intratumor heterogeneity using a spatial model of tumor growth
spatialDistribution Quantify the spatial distribution of mutants
visualizeTumor Interactive visualization of the simulated tumor