Retrospective Noise Control for fMRI


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Documentation for package ‘FIACH’ version 0.1.2

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arrMat Array to matrix transformation.
badData Identifies spurious observations
basisFunctions Informed basis set
boldContrast Maximum Theoretical BOLD signal observable
colMad Compute Column Median Absolute Deviations
colMedian Compute Column Medians
colsd Compute column standard deviations
convolve1d Finite Impulse Response filter
datatypes Supported Datatypes
dilate Separable Flat dilation
erode Separable Flat Erosion
fd Framewise Displacement
fftN Zero Padded 1D Fourier transform
fiach FIACH
gaussKernel 1 dimensional Gaussian smoothing kernel
getDatatype Determine Datatype
gmm Gaussian Mixture Model
GUI Graphical User Interface for using the fiach function.
hampel Hampel Filter
highBasis High pass filter basis set
highPass SPM high pass filter
kaiserWin Kaiser Window
kmeansMask Binarize vector, matrix or array
lowBasis Low pass filter basis set
matArr Matrix to Array Transformation.
naSpline Interpolate NAs
plot.gmm Plot a Gaussian Mixture Model
pseudo Pseudoinverse.
quantMask Compute the Mask Vector
rawPeriodogram Raw Periodogram
readNii Input function for fmri data
rowMad Compute row Median Absolute Deviations
rowMedian Compute Row Medians
rowsd Compute row standard deviations
rp Realignment parameters
selectR Interactive File Selector
sepConvolve3d Fast 3d Convolution
sinc Sinc Pulse
spmHrf Canonical Haemodynamic Response Function.
spmOrth Serial Orthogonalisation
t2Grey Transverse Relaxation
t2sGrey Effective Transverse Relaxation
viewR Interactive Medical Image Viewer
zeroNa Zero non finite values