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| calcWOI-package | Calculates the Wavelet-Based Organization Index |
| AICEN | File with Inverse A matrix and centre of mass matrix |
| blowup | Adds zeros around 2D array |
| buildperiodic | Builds periodic array by mirroring at side and top |
| calcWOI | Calculates the Wavelet-Based Organization Index |
| flatten | Reduces the boundary gradients |
| shiftmat | Shifts the elements of a matrix |
| wavtra | Performs the wavelet transform |
| WOI | Calculates WOI, modified WOI and LWOI |