trialr-package | Clinical Trial Designs in 'RStan' |
as.data.frame.crm_fit | Convert crm_fit object to 'data.frame'. |
as.data.frame.efftox_fit | Convert efftox_fit object to 'data.frame'. |
BebopInPeps2 | Stan model for BEBOP implementation in PePS2 clinical trial |
crm_fit | Class of model fit by 'trialr' using the CRM dose-finding design. |
crm_fit-class | Class of model fit by 'trialr' using the CRM dose-finding design. |
crm_params | Container class for parameters to fit the CRM models in trialr. |
crm_params-class | Container class for parameters to fit the CRM models in trialr. |
crm_process | Process RStan samples from a CRM model |
df_parse_outcomes | Parse a string of dose-finding trial outcomes to binary vector notation. |
EffTox | Stan model for EffTox dose-finding design |
efftox_analysis | Processed results of an EffTox dose-update analysis |
efftox_analysis_to_df | EffTox analysis to data.frame |
efftox_contour_plot | Plot EffTox utility contours |
efftox_dtps | Calculate dose-transition pathways for an EffTox study |
efftox_fit | Class of model fit by 'trialr' using the EffTox dose-finding design. |
efftox_fit-class | Class of model fit by 'trialr' using the EffTox dose-finding design. |
efftox_get_tox | Get the Prob(Tox) for Prob(Eff) and utility pairs |
efftox_parameters_demo | Get parameters to run the EffTox demo |
efftox_params | Container class for parameters to fit the EffTox model in trialr. |
efftox_params-class | Container class for parameters to fit the EffTox model in trialr. |
efftox_parse_outcomes | Parse a string of EffTox outcomes to binary vector notation. |
efftox_process | Process RStan samples from an EffTox model |
efftox_simulate | Run EffTox simulations |
efftox_solve_p | Calculate the p-index for EffTox utility contours |
efftox_superiority | Get dose-superiority matrix in EffTox |
efftox_utility | Get the utility of efficacy & toxicity probability pairs |
efftox_utility_density_plot | Plot densities of EffTox dose utilities |
gather_samples.crm_fit | Extract tall data.frame of posterior prob_tox samples. |
gather_samples.efftox_fit | Extract tall data.frame of posterior variable samples. |
model_BebopInPeps2 | Stan model for BEBOP implementation in PePS2 clinical trial |
model_EffTox | Stan model for EffTox dose-finding design |
model_ThallHierarchicalBinary | Stan model for Thall et al.'s hierarchical Bayesian model for binary data |
peps2_get_data | Get data to run the PePS2 trial example |
peps2_params | Parameters to be passed to 'BebopInPeps2' model in Stan |
peps2_process | Process RStan samples from a BEBOP model fit to PePS2 data |
peps2_run_sims | Run simulations of BEBOP in PePS2 |
plot.crm_fit | Plot an crm_fit |
plot.efftox_fit | Plot an efftox_fit |
print.crm_fit | Print crm_fit object. |
print.efftox_fit | Print efftox_fit object. |
ranBin2 | Sample pairs of correlated binary events |
Rcpp_model_BebopInPeps2 | Compiled Stan model for BEBOP implementation in PePS2 clinical trial |
Rcpp_model_BebopInPeps2-class | Compiled Stan model for BEBOP implementation in PePS2 clinical trial |
Rcpp_model_EffTox | Compiled Stan model for EffTox dose-finding design |
Rcpp_model_EffTox-class | Compiled Stan model for EffTox dose-finding design |
Rcpp_model_ThallHierarchicalBinary | Compiled Stan model for Thall et al.'s hierarchical Bayesian model for binary data |
Rcpp_model_ThallHierarchicalBinary-class | Compiled Stan model for Thall et al.'s hierarchical Bayesian model for binary data |
stanmodels | Stan models used by trialr |
stan_crm | Fit a CRM model |
stan_efftox | Fit an EffTox model |
stan_efftox_demo | Fit the EffTox model presented in Thall et al. (2014) |
stan_files | Stan file locations |
summary.crm_fit | Obtain summary of an crm_fit |
summary.efftox_fit | Obtain summary of an efftox_fit |
ThallHierarchicalBinary | Stan model for Thall et al.'s hierarchical Bayesian model for binary data |
thallhierarchicalbinary_parameters_demo | Get parameters to run the demo of Thall Hierarchical Binary model |
thallhierarchicalbinary_params | Parameters to be passed to the ThallHierachicalBinary model in Stan |
trialr | Clinical Trial Designs in 'RStan' |