Facilities for Simulating from ODE-Based Models


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Documentation for package ‘RxODE’ version 0.8.0-9

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+.solveRxDll rxChain Chain or add item to solved system of equations
.rxRmPrint Remove print statements
.rxRmSens Remove sensitivity equations
.rxRtoolsBaseWin Return Rtools base
.rxSymPyJacobian Calculate the full Jacobian for a model
.rxWinRtoolsPath Setup Rtools path
add.dosing Add dosing to eventTable
add.sampling Add sampling to eventTable
cholSE Generalized Cholesky Matrix Decomposition
coef.RxCompilationManager Return the RxODE coefficients
coef.rxDll Return the RxODE coefficients
coef.RxODE Return the RxODE coefficients
coef.solveRxODE Return the RxODE coefficients
coxBox Cox Box transformation
cvPost Sample a covariance Matrix from the Posteior Inverse Wishart distribution.
eventTable Create an event table object
genShinyApp.template Generate an example (template) of a dosing regimen shiny app
is.rxSolve Check to see if this is an rxSolve object.
predict.RxODE Solves a ODE equation
predict.rxSolve Solves a ODE equation
print.rxCoefSolve Print the rxCoefSolve object
print.RxODE Print information about the RxODE object.
rinvchisq Scaled Inverse Chi Squared distribution
rxAddReturn Add a return statment to a function.
rxAssignPtr Assign pointer based on model variables
rxChain rxChain Chain or add item to solved system of equations
rxClean Cleanup anonymous DLLs
rxCompile Compile a model if needed
rxCompile.character Compile a model if needed
rxCompile.rxDll Compile a model if needed
rxCompile.RxODE Compile a model if needed
rxCores Get the number of cores in a system
rxDelete Delete the DLL for the model
rxDfdy Jacobian and parameter derivatives
rxFoExpandEta First Order Expansion of ETA
rxGetRxODE Get RxODE model from object
rxHtml Format rxSolve and related objects as html.
rxHtml.rxSolve Format rxSolve and related objects as html.
rxInv Invert matrix using Rcpp Armadilo.
rxIsCurrent Checks if the RxODE object was built with the current build
rxLhs Left handed Variables
rxNorm Get the normalized model
RxODE Create an ODE-based model specification
rxOptExpr Optimize RxODE for computer evaluation
rxOptions Options for RxODE
rxParam Parameters specified by the model
rxParams Parameters specified by the model
rxPermissive Permissive or Strict RxODE sytax options
rxProgress RxODE progress bar functions
rxProgressAbort RxODE progress bar functions
rxProgressStop RxODE progress bar functions
rxSetProd Choose the type of product to use in RxODE. These are used in the RxODE 'prod' blocks
rxSetSum Choose the type of sums to use for RxODE.
rxShiny Use Shiny to help develop an RxODE model
rxShiny.default Use Shiny to help develop an RxODE model
rxShiny.rxSolve Use Shiny to help develop an RxODE model
rxSimThetaOmega Simulate Parameters from a Theta/Omega specification
rxSolve Solves a ODE equation
rxSolve.default Solves a ODE equation
rxState State variables
rxStrict Permissive or Strict RxODE sytax options
rxSumProdModel Recast model in terms of sum/prod
rxSymInvChol Get Omega^-1 and derivatives
rxSymPyFix Fix SymPy expressions to be R parsable expressions
rxSymPySensitivity Calculate the sensitivity equations for a model
rxSymPyVersion Return the version of SymPy that is running
rxSyncOptions Sync options with RxODE varaibles
rxTest Validate RxODE
rxTick RxODE progress bar functions
rxTrans Translate the model to C code if needed
rxTrans.character Translate the model to C code if needed
rxTrans.default Translate the model to C code if needed
rxValidate Validate RxODE
rxWinPythonSetup Setup Python and SymPy for windows
rxWinSetup Setup Windows components for RxODE
simulate.RxODE Solves a ODE equation
simulate.rxSolve Solves a ODE equation
solve.RxODE Solves a ODE equation
solve.rxSolve Solves a ODE equation
sqrtm Return the square root of general square matrix A
summary.RxODE Print expanded information about the RxODE object.
update.rxSolve Solves a ODE equation
write.template.server Generate an example (template) of a dosing regimen shiny app
write.template.ui Generate an example (template) of a dosing regimen shiny app
yeoJohnson Yeo-Johnson Transformation