Dynamic Assembly Model of Colonization, Local Extinction and Speciation


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Documentation for package ‘DAMOCLES’ version 1.1

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DAMOCLES-package Dynamic Assembly Model Of Colonization, Local Extinction and Speciation
DAMOCLES Dynamic Assembly Model Of Colonization, Local Extinction and Speciation
DAMOCLES_bootstrap Phylogenetic community structure hypothesis test
DAMOCLES_loglik Likelihood for DAMOCLES model
DAMOCLES_ML Maximization of the loglikelihood under the DAMOCLES model
DAMOCLES_sim Simulating DAMOCLES
NWPrimates_data Dated phylogenetic tree of the New World Primates in nexus format and presence-absence matrix for species in Manu