| .check_coef | Check the validity of a vector of coefficients |
| .check_varcov | Check the validity of a vector of coefficients |
| .dummy_ctm | Dummy ctm model with random effects as offsets |
| .mlt_data | Extract information from an mlt model |
| .model_name | Create name for a specific tramME model |
| .nobars | Remove random effects terms |
| .parallel_default | Boilerplate parallel-handling function, copied from 'lme4' |
| .paridx | Match parameters with parameter groups and indeces |
| .renames | Return names for random effects parameters |
| .re_data | Create RE data |
| .re_format | Reshape unformatted random effects vectors |
| .re_size | Calculates the size of the random effect vector implied by the model and the data |
| .sim_re | Simulates random effects vector from a tramME object |
| .subbars | My own version of lme4::subbar |
| .tramME | General ME tram model |
| anova.tramME | Comparison of nested tramME models. |
| BoxCoxME | ME version of tram::BoxCox |
| coef.LmME | Extract the coefficients of the fixed effects terms of an LmME model. |
| coef.tramME | Extract the coefficients of the fixed effects terms. |
| coef<-.tramME | Set coefficients of a tramME model. |
| ColrME | ME version of tram::Colr |
| confint.LmME | Confidence intervals for LmME model parameters |
| confint.tramME | Confidence intervals for tramME model parameters |
| CoxphME | ME version of tram::Coxph |
| LehmannME | ME version of tram::Lehmann |
| LmME | ME version of tram::Lm |
| logLik.tramME | Get the log-likelihood of the model |
| plot.trafo.tramME | Plotting method for 'trafo.tramME' objects |
| plot.tramME | Plotting method for tramME objects |
| PolrME | ME version of tram::Polr |
| predict.tramME | Predict method for tramME objects |
| print.anova.tramME | Printing 'anova.tramME' table |
| print.simulate.tramME | Print method for 'simulate.tramME' objects |
| print.summary.tramME | Print method for tramME model summary |
| print.tramME | Print tramME model |
| print.VarCorr.tramME | Print method for the variance-correlation parameters of a tramME object |
| ranef | Extract the conditional modes and conditional variances of random effects |
| ranef.LmME | Extract the conditional modes of random effects of an LmME model |
| ranef.tramME | Extract the conditional modes and conditional variances of random effects |
| refit.tramME | Refit the model with a new response vector |
| sigma.LmME | Extract the SD of the error term of an LmME model. |
| simulate.tramME | Simulate outcome variable from an estimated model |
| summary.tramME | Summary method for tramME model |
| SurvregME | ME version of tram::Survreg |
| trafo | Generic method for extracting baseline transformations |
| trafo.tramME | Get the baseline transformation function and its confidence interval |
| VarCorr | Variances and correlation matrices of random effects |
| VarCorr.LmME | Variances and correlation matrices of random effects of an LmME object |
| VarCorr.tramME | Variances and correlation matrices of random effects |
| varcov | Generic method for 'varcov' |
| varcov.tramME | Extract the variance-covariance matrix of the random effects |
| varcov<- | Generic method for '"varcov<-"' |
| varcov<-.tramME | Set the values of the random effects covariance matrices of a tramME model. |
| variable.names.tramME | Return variable names. |
| vcov.LmME | Get the variance-covariance matrix of the parameters of an LmME model |
| vcov.tramME | Calculate the variance-covariance matrix of the parameters |