| add_attr | Add attribute to abject |
| add_class | Add class to abject |
| annot_to_list | annot_to_list |
| as_matrix | Get matrix from tibble |
| check_if_counts_is_na | Check whether there are NA counts |
| check_if_duplicated_genes | Check whether there are duplicated genes/transcripts |
| check_if_wrong_input | Check whether there are NA counts |
| drop_class | Remove class to abject |
| error_if_log_transformed | Check whether a numeric vector has been log transformed |
| get_abundance_norm_if_exists | Get column names either from user or from attributes |
| get_elements | Get column names either from user or from attributes |
| get_elements_features | Get column names either from user or from attributes |
| get_elements_features_abundance | Get column names either from user or from attributes |
| get_sample_counts | Get column names either from user or from attributes |
| get_sample_transcript | Get column names either from user or from attributes |
| get_sample_transcript_counts | Get column names either from user or from attributes |
| get_x_y_annotation_columns | get_x_y_annotation_columns |
| heatmap | Creates a 'ComplexHeatmap' plot from 'tbl_df' |
| heatmap.default | Creates a 'ComplexHeatmap' plot from 'tbl_df' |
| heatmap.tbl_df | Creates a 'ComplexHeatmap' plot from 'tbl_df' |
| ifelse2_pipe | This is a generalisation of ifelse that acceots an object and return an objects |
| ifelse_pipe | This is a generalisation of ifelse that acceots an object and return an objects |
| N52 | Example data set N52 |
| parse_formula | .formula parser |
| pasilla | Example data set Pasilla |
| plot_heatmap | plot_heatmap |
| prepend | From rlang deprecated |
| quo_names | Convert array of quosure (e.g. c(col_a, col_b)) into character vector |
| save_pdf | Save plot on PDF file |
| save_pdf-method | save_pdf |
| scale_design | Scale design matrix |
| scale_robust | Scale counts in a robust way against sd == 0 |
| select_closest_pairs | Sub function of remove_redundancy_elements_though_reduced_dimensions |
| type_to_annot_function | type_to_annot_function annot_* |