Time-Course Gene Set Analysis for RNA-Seq Data

Documentation for package ‘tcgsaseq’ version 1.8.1

tcgsaseq-package	tcgsaseq: a package to perform Time-course Gene Set Analysis and General Gene-Wise Analysis of RNA-seq data
baduel	Small portion of RNA-seq data from plant physiology study.
baduel_5gs	Small portion of RNA-seq data from plant physiology study.
baduel_gmt	Small portion of RNA-seq data from plant physiology study.
design	Small portion of RNA-seq data from plant physiology study.
dsFDR	Estimating the False Discovery Rate
expr_norm_corr	Small portion of RNA-seq data from plant physiology study.
PBT	PBT gene sets related to kidney transplant
PBT_gmt	PBT gene sets related to kidney transplant
perm_pe	Exact permutation p-values
qAbundanceDist	Gene abundance proportion distribution of RNA-seq data.
sp_weights	Non parametric local heteroscedasticity weights
tcgsaseq	tcgsaseq: a package to perform Time-course Gene Set Analysis and General Gene-Wise Analysis of RNA-seq data
tcgsa_seq	Time-course Gene Set Analysis
varseq	Variance component testing for RNA-seq data analysis
vc_test_asym	Computes variance component test statistic for longitudinal
vc_test_perm	Permutation-based variance component test statistic
voom_weights	Precision weights accounting for heteroscedasticity in RNA-seq count data