| phangorn::Ancestral | Ancestral Sequence Reconstruction | source | R code | ||
| phangorn::Trees | Constructing phylogenetic trees | source | R code | ||
| phangorn::phangorn-specials | Advanced features | source | R code | ||
| phangorn::IntertwiningTreesAndNetworks | IntertwiningTreesAndNetworks | HTML | source | R code | |
| phangorn::Networx | Splits and Networx | HTML | source | R code |