Manipulate MCMC Samples

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Documentation for package ‘mcmcr’ version 0.3.0

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A B C E F I M N P R S T V Z

-- A --

as.mcarray Coerce to an mcarray object
as.mcmc.list.mcarray Turn an object into a tidy tibble
as.mcmc.list.mcmc Turn an object into a tidy tibble
as.mcmc.list.mcmc.list Turn an object into a tidy tibble
as.mcmc.list.mcmcarray Turn an object into a tidy tibble
as.mcmc.list.mcmcr Turn an object into a tidy tibble
as.mcmc.mcarray Markov Chain Monte Carlo Objects
as.mcmc.mcmc Markov Chain Monte Carlo Objects
as.mcmc.mcmcarray Markov Chain Monte Carlo Objects
as.mcmc.mcmcr Markov Chain Monte Carlo Objects
as.mcmcarray Coerce to an mcmcarray object
as.mcmcr Convert to an mcmcr Object
as.mcmcr.list Coerce to an mcarray object
as.mcmcr.mcarray Convert to an mcmcr Object
as.mcmcr.mcmc Convert to an mcmcr Object
as.mcmcr.mcmc.list Convert to an mcmcr Object
as.mcmcr.mcmcarray Convert to an mcmcr Object
as.mcmcr.mcmcrs Convert to an mcmcr Object
as.mcmcr.nlist Convert to an mcmcr Object
as.mcmcr.nlists Convert to an mcmcr Object
as.mcmcrs Convert to an mcmcrs object
as.mcmcrs.list Convert to an mcmcrs object
as.mcmcrs.mcmcr Convert to an mcmcrs object
as_nlist.mcmc Coerce to nlist
as_nlist.mcmc.list Coerce to nlist
as_nlist.mcmcr Coerce to nlist
as_nlists.mcmc Coerce to nlists
as_nlists.mcmc.list Coerce to nlists
as_nlists.mcmcr Coerce to nlists

-- B --

bind_chains.mcarray Bind by Chains.
bind_chains.mcmc Bind by Chains.
bind_chains.mcmc.list Bind by Chains.
bind_chains.mcmcarray Bind by Chains.
bind_chains.mcmcr Bind by Chains.
bind_dimensions Combine two MCMC objects by dimensions
bind_dimensions_n Combine multiple MCMC objects by parameter dimensions
bind_iterations Combine two MCMC objects by iterations
bind_parameters Combine two MCMC object by parameters

-- C --

check_mcmcarray \Sexpr[results=rd, stage=render]{lifecycle::badge("soft-deprecated")} Check mcmcarray
check_mcmcr \Sexpr[results=rd, stage=render]{lifecycle::badge("soft-deprecated")} Check mcmcr
chk_mcmcarray Check MCMC Objects
chk_mcmcr Check MCMC Objects
chk_mcmcrs Check MCMC Objects
coef Term Coefficients
coef.mcmc Term Coefficients
collapse_chains.default Collapse Chains
collapse_chains.mcmc.list Collapse Chains
collapse_chains.mcmcr Collapse Chains
combine_dimensions Combine Samples by Dimensions
combine_samples Combine MCMC Samples of Two Objects
combine_samples_n Combine MCMC Samples of multiple objects
complete_terms.mcmc Complete Terms
converged.default Converged
converged.mcmcrs Converged

-- E --

esr.mcarray Effective Sampling Rate
esr.mcmc Effective Sampling Rate
esr.mcmc.list Effective Sampling Rate
esr.mcmcarray Effective Sampling Rate
esr.mcmcr Effective Sampling Rate
esr.mcmcrs Effective Sampling Rate
ess P-Value Effective Sample Size
estimates.mcarray Estimates
estimates.mcmc Estimates
estimates.mcmc.list Estimates
estimates.mcmcarray Estimates
estimates.mcmcr Estimates

-- F --

fill_all.mcarray Fill All Values
fill_all.mcmcarray Fill All Values
fill_all.mcmcr Fill All Values

-- I --

is.mcarray Is mcarray Object
is.mcmcarray Is mcmcarray Object
is.mcmcr Is mcmcr Object
is.mcmcrs Is mcmcrs Object

-- M --

mcmcarray-object mcmcarray
mcmcarray_object mcmcarray
mcmcr-object mcmcr
mcmcrs Create mcmcrs
mcmcrs-object mcmcrs
mcmcrs_object mcmcrs
mcmcr_example An Example mcmcr Object
mcmcr_object mcmcr
mcmc_aperm MCMC Object Transposition
mcmc_map MCMC Map

-- N --

nchains.mcarray Number of Chains
nchains.mcmc Number of Chains
nchains.mcmc.list Number of Chains
nchains.mcmcarray Number of Chains
nchains.mcmcr Number of Chains
nchains.mcmcrs Number of Chains
niters.mcarray Number of Iterations
niters.mcmc Number of Iterations
niters.mcmc.list Number of Iterations
niters.mcmcarray Number of Iterations
niters.mcmcr Number of Iterations
niters.mcmcrs Number of Iterations
npars.mcarray Number of Parameters
npars.mcmcarray Number of Parameters
npars.mcmcr Number of Parameters
npdims.mcmc.list Number of Parameter Dimensions
npdims.mcmcarray Number of Parameter Dimensions
npdims.mcmcr Number of Parameter Dimensions
nterms.mcmc Number of Terms
nterms.mcmc.list Number of Terms
nterms.mcmcarray Number of Terms
nterms.mcmcr Number of Terms
nterms.mcmcrs Number of Terms

-- P --

parameters Parameter Names
parameters.mcmc Parameter Names
parameters.mcmc.list Parameter Names
parameters.mcmcr Parameter Names
parameters.mcmcrs Parameter Names
parameters<- Set Parameters
params Parameter Descriptions
pars.mcmc Parameter Names
pars.mcmc.list Parameter Names
pars.mcmcr Parameter Names
pars.mcmcrs Parameter Names
pdims.mcarray Parameter Dimensions
pdims.mcmc Parameter Dimensions
pdims.mcmc.list Parameter Dimensions
pdims.mcmcarray Parameter Dimensions
pdims.mcmcr Parameter Dimensions

-- R --

rhat.mcarray R-hat
rhat.mcmc R-hat
rhat.mcmc.list R-hat
rhat.mcmcarray R-hat
rhat.mcmcr R-hat
rhat.mcmcrs R-hat

-- S --

set_pars.mcmc Set Parameters
set_pars.mcmc.list Set Parameters
set_pars.mcmcr Set Parameters
set_pars.mcmcrs Set Parameters
split_chains.mcmcarray Split Chains
split_chains.mcmcr Split Chains
subset Subset an MCMC Object
subset.mcmc Subset an MCMC Object
subset.mcmc.list Subset an MCMC Object
subset.mcmcarray Subset an MCMC Object
subset.mcmcr Subset an MCMC Object
subset.mcmcrs Subset an MCMC Object

-- T --

tidy.mcmc Turn an object into a tidy tibble
tidy.mcmc.list Turn an object into a tidy tibble
tidy.mcmc.mcmcr Turn an object into a tidy tibble

-- V --

vld_mcmcarray Validate MCMC Objects
vld_mcmcr Validate MCMC Objects
vld_mcmcrs Validate MCMC Objects

-- Z --

zero Zero MCMC Sample Values
zero.mcarray Zero MCMC Sample Values
zero.mcmcarray Zero MCMC Sample Values
zero.mcmcr Zero MCMC Sample Values