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| csSAM-package | Cell-specific Differential Expression (csSAM) |
| csfit | csfit: Deconvolution from Known Cell Proportions |
| csSAM | csSAM |
| csSamWrapper | csSamWrapper function - performs entire functionality |
| fdrCsSAM | fdrCsSAM |
| fdrSAM | fdrSAM |
| findSigGene | findSigGene |
| plotCsSAM | plotcsSAM |
| runSAM | runSAM |