| adductsTable | Adducts table |
| assignDB | load LipidMS default data bases |
| baconjdb | Bile acids conjugates database |
| badb | Bile acids database |
| carnitinesdb | Carnitines database |
| CEdb | CEs database |
| cerdb | ceramides database |
| chainFrags | Search of chain specific fragments |
| checkClass | Search of class fragments to confirm the lipid class. |
| checkIntensityRules | Check intensity rules |
| cldb | Cardiolipins database |
| coelutingFrags | Coeluting fragments extraction |
| coelutionScore | calculate coelution score between two peaks |
| combineChains | Combine chain fragments that could belong to the same precursor. |
| confLevels | Confidence Annotation Levels |
| createLipidDB | Customizable lipid DBs creator |
| crossTables | Cross the original MS1 peaklist with the annotation results |
| dataProcessing | Process mzXML files: peakpicking and deisotoping |
| dgdb | DGs database |
| fadb | FAs database |
| fahfadb | FAHFAs database |
| findCandidates | Search of lipid candidates of a certain class. |
| getInclusionList | Obtain an inclusion list from the annotation results |
| hfadb | HFAs database |
| idBAneg | Bile Acids (BA) annotation for ESI- |
| idCarpos | Carnitine annotation for ESI+ |
| idCEpos | Cholesterol Esthers (CE) annotation for ESI+ |
| idCerneg | Ceramides (Cer) annotation for ESI- |
| idCerpos | Ceramides (Cer) annotation for ESI+ |
| idCLneg | Cardiolipines (CL) annotation for ESI- |
| idDGpos | Diacylglycerols (DG) annotation for ESI+ |
| idFAHFAneg | FAHFA annotation for ESI- |
| idFAneg | Fatty Acids (FA) annotation for ESI- |
| idLPCneg | Lysophosphocholines (LPC) annotation for ESI- |
| idLPCpos | Lysophosphocholines (LPC) annotation for ESI+ |
| idLPEneg | Lysophosphoethanolamines (LPE) annotation for ESI- |
| idLPEpos | Lysophosphoethanolamines (LPE) annotation for ESI+ |
| idLPGneg | Lysophosphoglycerols (LPG) annotation for ESI- |
| idLPIneg | Lysophosphoinositols (LPI) annotation for ESI- |
| idLPSneg | Lysophosphoserines (LPS) annotation for ESI- |
| idMGpos | Monoacylglycerol (MG) annotation for ESI+ |
| idNEG | Lipids annotation for ESI- |
| idPCneg | Phosphocholines (PC) annotation for ESI- |
| idPCpos | Phosphocholines (PC) annotation for ESI+ |
| idPEneg | Phosphoethanolamines (PE) annotation for ESI- |
| idPEpos | Phosphoethanolamines (PE) annotation for ESI+ |
| idPGneg | Phosphoglycerols (PG) annotation for ESI- |
| idPIneg | Phosphoinositols (PI) annotation for ESI- |
| idPOS | Lipids annotation for ESI+ |
| idPSneg | Phosphoserines (PS) annotation for ESI- |
| idSMpos | Sphyngomyelines (SM) annotation for ESI+ |
| idSphneg | Sphingoid bases (Sph) annotation for ESI- |
| idSphPneg | Sphingoid bases phosphate (SphP) annotation for ESI- |
| idSphpos | Sphingoid bases (Sph) annotation for ESI- |
| idSphPpos | Sphingoid bases phosphate (SphP) annotation for ESI+ |
| idTGpos | Triacylglycerols (TG) annotation for ESI+ |
| lysopadb | LPAs database |
| lysopcdb | LPCs database |
| lysopedb | LPEs database |
| lysopgdb | LPGs database |
| lysopidb | LPIs database |
| lysopsdb | LPSs database |
| mgdb | MGs database |
| nlsphdb | Neutral losses db for sphingoid bases. It is employed by idCerneg function. |
| organizeResults | Prepare output for LipidMS annotation functions |
| padb | PAs database |
| pcdb | PCs database |
| pedb | PEs database |
| pgdb | PGs database |
| pidb | PIs database |
| psdb | PSs database |
| searchIsotopes | Target isotopes search |
| sepByCE | Separate .mzXML files by CE |
| smdb | SMs database |
| sphdb | Sphingoid bases database |
| sphPdb | Sphingoid bases phosphate database |
| tgdb | TGs database |