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| DAISIE-package | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |
| DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |
| DAISIE_convertprobdist | Converts the joint distribution of endemics and non-endemics under the DAISIE model to list format |
| DAISIE_dataprep | Prepare colonisation and branching time data to run in DAISIE. |
| DAISIE_ExpEIN | The expected number of endemics and non-endemics under the DAISIE model |
| DAISIE_loglik_all | Computes the loglikelihood of the DAISIE model given data and a set of model parameters |
| DAISIE_loglik_CS | Computes the loglikelihood of the DAISIE model given data and a set of model parameters |
| DAISIE_margprobdist | The marginal distribution of endemics and non-endemics under the DAISIE model |
| DAISIE_ML | Maximization of the loglikelihood under the DAISIE model |
| DAISIE_numcol | The expectation and marginal distribution of the number of colonizations (lineages) under the DAISIE model |
| DAISIE_plot_age_diversity | Plot clade age against clade diversity. |
| DAISIE_plot_island | Plot colonisation and branching time of species found on an island dataset. |
| DAISIE_plot_sims | Plot island species-through-time (STT) plots |
| DAISIE_probdist | The joint distribution of endemics and non-endemics under the DAISIE model |
| DAISIE_sim | Simulate islands with given parameters. |
| DAISIE_tutorial | Opens DAISIE tutorial |
| Galapagos_datalist | Colonization and branching times of 8 terrestrial avifaunal clades in list format, accepted by DAISIE_ML and DAISIE_loglik_all |
| Galapagos_datalist_2types | Colonization and branching times of 8 terrestrial avifaunal clades in list format, accepted by DAISIE_ML and DAISIE_loglik_all |
| Galapagos_datatable | Colonization and branching times of 8 terrestrial avifaunal clades in table format |
| islands_10reps_RAW | 1000 islands in RAW format simulated with the ML parameters of the CR model for the Galapagos data |
| islands_1type_1000reps | 1000 islands in DAISIE format simulated with the ML parameters of the CR model for the Galapagos data |
| islands_2types_1000reps | 1000 islands in DAISIE format simulated with the ML parameters of the CR_lamc_mu_K model for the Galapagos data (2 types of species) |
| Macaronesia_datalist | Colonization and branching times of terrestrial avifaunal clades from Azores, Canary Islands, Cape Verde and Madeira in list format, accepted by DAISIE_ML and DAISIE_loglik_all |