taxlist-package |
taxlist: Handling taxonomic lists. |
$ |
Extract or Replace Parts of taxlist Objects |
$-method |
Extract or Replace Parts of taxlist Objects |
accepted_name |
Manage accepted names, synonyms and basionyms |
accepted_name-method |
Manage accepted names, synonyms and basionyms |
accepted_name<- |
Manage accepted names, synonyms and basionyms |
accepted_name<--method |
Manage accepted names, synonyms and basionyms |
add_concept |
Retrieve or replace slot taxonRelations in taxlist objects |
add_concept-method |
Retrieve or replace slot taxonRelations in taxlist objects |
add_level |
Deprecated functions |
add_parent |
Deprecated functions |
add_synonym |
Handle information on taxon usage names. |
add_synonym-method |
Handle information on taxon usage names. |
add_trait |
Deprecated functions |
add_view |
Management of concept views in taxonomic lists. |
add_view-method |
Management of concept views in taxonomic lists. |
as.list |
Coerce an S4 object to a list. |
as.list-method |
Coerce an S4 object to a list. |
backup_object |
Make and load backups of R objects |
basionym |
Manage accepted names, synonyms and basionyms |
basionym-method |
Manage accepted names, synonyms and basionyms |
basionym<- |
Manage accepted names, synonyms and basionyms |
basionym<--method |
Manage accepted names, synonyms and basionyms |
change_concept<- |
Merge concepts or move names |
change_concept<--method |
Merge concepts or move names |
clean |
Delete orphaned records |
clean-method |
Delete orphaned records |
clean_strings |
Cleaning character strings. |
clean_strings-method |
Cleaning character strings. |
count_taxa |
Count taxa within a taxlist object. |
count_taxa-method |
Count taxa within a taxlist object. |
delete_name |
Handle information on taxon usage names. |
delete_name-method |
Handle information on taxon usage names. |
Deprecated-functions |
Deprecated functions |
df2taxlist |
Convert data frames into taxlist objects |
df2taxlist-method |
Convert data frames into taxlist objects |
dissect_name |
Dissect Scientific Names into their Elements |
Easplist |
List of vascular plants from East Africa |
Easplist-data |
List of vascular plants from East Africa |
Extract |
Extract or Replace Parts of taxlist Objects |
get_children |
Retrieve children or parents of taxon concepts |
get_children-method |
Retrieve children or parents of taxon concepts |
get_parents |
Retrieve children or parents of taxon concepts |
get_parents-method |
Retrieve children or parents of taxon concepts |
insert_rows |
Data manipulation. |
levels |
Set and retrieves hierarchical levels |
levels-method |
Set and retrieves hierarchical levels |
levels<- |
Set and retrieves hierarchical levels |
levels<--method |
Set and retrieves hierarchical levels |
load_last |
Make and load backups of R objects |
match_names |
Search matchings between character and taxlist objects |
match_names-method |
Search matchings between character and taxlist objects |
merge_taxa |
Merge concepts or move names |
merge_taxa-method |
Merge concepts or move names |
print_name |
Format usage names for publications |
print_name-method |
Format usage names for publications |
replace_idx |
Data manipulation. |
replace_na |
Data manipulation. |
replace_view |
Deprecated functions |
replace_x |
Data manipulation. |
S4_to_list |
Coerce an S4 object to a list. |
subset |
Subset method for taxlist objects |
subset-method |
Subset method for taxlist objects |
summary |
Print overviews for taxlist Objects and their content |
summary-method |
Print overviews for taxlist Objects and their content |
synonyms |
Manage accepted names, synonyms and basionyms |
synonyms-method |
Manage accepted names, synonyms and basionyms |
tax2traits |
Set taxonomic information as taxon traits |
tax2traits-method |
Set taxonomic information as taxon traits |
taxlist-class |
An S4 class to represent taxonomic lists. |
taxlist2taxmap |
Conversion among taxlist and taxmap objects |
taxlist2taxmap-method |
Conversion among taxlist and taxmap objects |
taxmap2taxlist |
Conversion among taxlist and taxmap objects |
taxon_names |
Handle information on taxon usage names. |
taxon_names-method |
Handle information on taxon usage names. |
taxon_names<- |
Handle information on taxon usage names. |
taxon_names<--method |
Handle information on taxon usage names. |
taxon_relations |
Retrieve or replace slot taxonRelations in taxlist objects |
taxon_relations-method |
Retrieve or replace slot taxonRelations in taxlist objects |
taxon_relations<- |
Retrieve or replace slot taxonRelations in taxlist objects |
taxon_relations<--method |
Retrieve or replace slot taxonRelations in taxlist objects |
taxon_traits |
Manipulation of taxon traits in taxlist objects. |
taxon_traits-method |
Manipulation of taxon traits in taxlist objects. |
taxon_traits<- |
Manipulation of taxon traits in taxlist objects. |
taxon_traits<--method |
Manipulation of taxon traits in taxlist objects. |
taxon_views |
Management of concept views in taxonomic lists. |
taxon_views-method |
Management of concept views in taxonomic lists. |
taxon_views<- |
Management of concept views in taxonomic lists. |
taxon_views<--method |
Management of concept views in taxonomic lists. |
tnrs |
Taxonomic Name Resolution Service |
tnrs-method |
Taxonomic Name Resolution Service |
tv2taxlist |
Import species lists from Turboveg databases |
update_concept |
Retrieve or replace slot taxonRelations in taxlist objects |
update_concept-method |
Retrieve or replace slot taxonRelations in taxlist objects |
update_name |
Handle information on taxon usage names. |
update_name-method |
Handle information on taxon usage names. |
update_trait |
Manipulation of taxon traits in taxlist objects. |
update_trait-method |
Manipulation of taxon traits in taxlist objects. |
[ |
Extract or Replace Parts of taxlist Objects |
[-method |
Extract or Replace Parts of taxlist Objects |